Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi5g0004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g0005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g0006 Acco06g0263 . Accr5g02797 . . Adu04g00798 . Aed4g0620 . . . . . . Alju03g3155 . . . . . . Arst4g01199 . . . . . . . . . Cca08g01805 Dere02g0013 . . . . . Glsi11g0312 . . . . . . . . . . Lal7g1003 Lal19g1143 . . . . . . . . . . Lapu6g01860 . Lasa1g01409 Lele13g2204 Lele14g2141 Lele15g0210 Lele16g0217 . . . . . . . . . Mepo6g01313 . Mesa5g03327 Mibi06g2704 . . . . Phac6g01735 Phco6g01309 Phco11g01132 Prci3g3665 . Psa1g3711 . Pste4g01318 Pste2g02968 Pte18g02002 . . Pte2g01643 . Pumo2g00059 Pvu7g2095 Pvu6g1267 . Rops11g01409 . Seca6g04139 Spst10g01786 Spst6g01498 . Ssu1g1181 . . . . . Trre3g01514 . . . Vian6g01147 . Vifa1g09553 Vimu3g01996 Vimu2g01442 . Viun6g01899 . Vivi4g02941 . Vra10g0739
Vvi5g0007 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g0009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g0010 . . . . . . . . . . Ahy11g2741 . Aip01g02975 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g0011 . . . . . . . . . . Ahy11g2741 . Aip01g02975 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g0012 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g0013 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi5g0004 Chr5 19031 22803 -
Vvi Vvi5g0005 Chr5 27138 27806 -
Vvi Vvi5g0006 Chr5 32006 35867 +
Acco Acco06g0263 Chr06 1671736 1678805 -
Accr Accr5g02797 Chr5 53777409 53779576 +
Adu Adu04g00798 Chr04 11281525 11284364 +
Aed Aed4g0620 Chr4 5280069 5282874 +
Alju Alju03g3155 Chr03 56125562 56134319 +
Arst Arst4g01199 Chr4 11245515 11248661 +
Cca Cca08g01805 Chr08 50394613 50396803 -
Dere Dere02g0013 Chr02 125458 129636 +
Glsi Glsi11g0312 Chr11 2037851 2040023 -
Lal Lal7g1003 Chr7 16213895 16217128 +
Lal Lal19g1143 Chr19 14948407 14950797 -
Lapu Lapu6g01860 Chr6 18382579 18386971 +
Lasa Lasa1g01409 Chr1 118200460 118202576 +
Lele Lele13g2204 Chr13 28470134 28473979 +
Lele Lele14g2141 Chr14 26860087 26863851 +
Lele Lele15g0210 Chr15 1205240 1207342 -
Lele Lele16g0217 Chr16 1209090 1217213 -
Mepo Mepo6g01313 Chr6 14250558 14254560 +
Mesa Mesa5g03327 Chr5 59495626 59499255 -
Mibi Mibi06g2704 Chr06 46978381 46984635 +
Phac Phac6g01735 Chr6 18513871 18518652 -
Phco Phco6g01309 Chr6 13158080 13160314 -
Phco Phco11g01132 Chr11 8413104 8416651 +
Prci Prci3g3665 Chr3 46028468 46031863 +
Psa Psa1g3711 Chr1 312192420 312194810 -
Pste Pste4g01318 Chr4 9720948 9723930 -
Pste Pste2g02968 Chr2 29607280 29611865 +
Pte Pte18g02002 Chr18 30470743 30472686 +
Pte Pte2g01643 Chr2 35355809 35359608 +
Pumo Pumo2g00059 Chr2 1288493 1292929 +
Pvu Pvu7g2095 Chr7 44269055 44272273 -
Pvu Pvu6g1267 Chr6 23683623 23687986 -
Rops Rops11g01409 Chr11 20837701 20840940 +
Seca Seca6g04139 Chr6 109130651 109134711 -
Spst Spst10g01786 Chr10 18235722 18238091 -
Spst Spst6g01498 Chr6 14050109 14054643 +
Ssu Ssu1g1181 Chr1 25912984 25914829 +
Trre Trre3g01514 Chr3 11837948 11841411 +
Vian Vian6g01147 Chr6 29061403 29065355 -
Vifa Vifa1g09553 Chr1 1530484475 1530486543 -
Vimu Vimu3g01996 Chr3 34850836 34853025 +
Vimu Vimu2g01442 Chr2 9792102 9796072 +
Viun Viun6g01899 Chr6 25960151 25964411 -
Vivi Vivi4g02941 Chr4 137360498 137363109 -
Vra Vra10g0739 Chr10 13414178 13416447 +
Vvi Vvi5g0007 Chr5 35998 36426 +
Vvi Vvi5g0008 Chr5 65506 82703 +
Vvi Vvi5g0009 Chr5 83916 84482 -
Vvi Vvi5g0010 Chr5 85362 86460 -
Ahy Ahy11g2741 Chr11 144085598 144087178 +
Aip Aip01g02975 Chr01 132134401 132136019 +
Vvi Vvi5g0011 Chr5 86891 89675 +
Ahy Ahy11g2741 Chr11 144085598 144087178 +
Aip Aip01g02975 Chr01 132134401 132136019 +
Vvi Vvi5g0012 Chr5 98796 99113 +
Vvi Vvi5g0013 Chr5 99415 104892 -
Adu Adu04g00798 Chr04 11281525 11284364 +
Arst Arst4g01199 Chr4 11245515 11248661 +
Lapu Lapu6g01860 Chr6 18382579 18386971 +
Lasa Lasa1g01409 Chr1 118200460 118202576 +
Mepo Mepo6g01313 Chr6 14250558 14254560 +
Mesa Mesa5g03327 Chr5 59495626 59499255 -
Phac Phac6g01735 Chr6 18513871 18518652 -
Phco Phco11g01132 Chr11 8413104 8416651 +
Pste Pste2g02968 Chr2 29607280 29611865 +
Pte Pte2g01643 Chr2 35355809 35359608 +
Pte Pte2g01643 Chr2 35355809 35359608 +
Pumo Pumo2g00059 Chr2 1288493 1292929 +
Pvu Pvu6g1267 Chr6 23683623 23687986 -
Rops Rops11g01409 Chr11 20837701 20840940 +
Seca Seca6g04139 Chr6 109130651 109134711 -
Spst Spst6g01498 Chr6 14050109 14054643 +
Trre Trre3g01514 Chr3 11837948 11841411 +
Vian Vian6g01147 Chr6 29061403 29065355 -
Vifa Vifa1g09553 Chr1 1530484475 1530486543 -
Vimu Vimu2g01442 Chr2 9792102 9796072 +
Viun Viun6g01899 Chr6 25960151 25964411 -
Vivi Vivi4g02941 Chr4 137360498 137363109 -
Vivi Vivi4g02941 Chr4 137360498 137363109 -
Ahy Ahy11g2741 Chr11 144085598 144087178 +
Aip Aip01g02975 Chr01 132134401 132136019 +
Lal Lal7g1003 Chr7 16213895 16217128 +
Lal Lal19g1143 Chr19 14948407 14950797 -
Acco Acco06g0263 Chr06 1671736 1678805 -
Accr Accr5g02797 Chr5 53777409 53779576 +
Alju Alju03g3155 Chr03 56125562 56134319 +
Dere Dere02g0013 Chr02 125458 129636 +
Glsi Glsi11g0312 Chr11 2037851 2040023 -
Lele Lele13g2204 Chr13 28470134 28473979 +
Lele Lele14g2141 Chr14 26860087 26863851 +
Lele Lele15g0210 Chr15 1205240 1207342 -
Lele Lele16g0217 Chr16 1209090 1217213 -
Mibi Mibi06g2704 Chr06 46978381 46984635 +
Phco Phco6g01309 Chr6 13158080 13160314 -
Prci Prci3g3665 Chr3 46028468 46031863 +
Pste Pste4g01318 Chr4 9720948 9723930 -
Pte Pte18g02002 Chr18 30470743 30472686 +
Pvu Pvu7g2095 Chr7 44269055 44272273 -
Spst Spst10g01786 Chr10 18235722 18238091 -
Vimu Vimu3g01996 Chr3 34850836 34853025 +