Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06256 ATGGAGGACACAATTCCAGTGATTGATGTTGAAAATCTTTCAGATCAGACTGAAGGGAAGAAGCTAAGAGATGCATGTGAAAAATGGGGTTGTTTCAGAATAATCAACCACTCTACTCCTTTAACTCTTATGGCTGAGATGAAGAGGGTTTCTGAAGCACTTCTTGACCTTCCTGTGGAGATAAAGAAAAACAACAAAGATGTAATTGCTGGAAGTGGTTACAAGGCTCCAAGTGATGTTAATCCTCTTTATGAAGCTTTAGGACTCTATGATTTGGGGTCTTCACAAGTTATGCAAGATTTCTGCTCTCAGTTAAATGTCACACCCTATCAGAGGAAAGTAATGGAGGCATATGGCAAAGCAATACATGAATTGGCAGTAAAAATAGGAGAAAAAATGGCTGAATCATTAGGCATATTTGGTGCTGATTTTGAAGATTGGCCATGCCAATTCAGAATTAACAAATATCACTTCACTCCAAAAGCTATAGGCTCCCTTGGAGTTCAACTGCACACAGATTCAGGGTTCTTAACAATCCTTCAAGATGATGAAAGTGTTGGTGGTCTTGAAGTTGTGAACCAATCTGGCTCATTTGTTTCAGTTCCTCCATTTCATGGAACCCTCCTAGTTAATCTTGGAGACATTGCTAAAGTATGGAGCAATGGAAGGTTTTTCAATGTGAAGCATCGTGTGCAATGCAAGGAAGCTGCTATACGTTTTTCAATTGCTACATTTATGTTAGGACCTAGGAAGGGAAATGTTGAGGCTCCAATAGAGATGGTGGATCATGATCATCCACGTTTATATCAACCTTTTGTTTATGAAGATTTTAGAAAACTCAGAGTTTCCAAGAAAATGCATACTGGTGAAGCTCTTGAGTTATTACGCTTATGGTAA 897 0.388 MEDTIPVIDVENLSDQTEGKKLRDACEKWGCFRIINHSTPLTLMAEMKRVSEALLDLPVEIKKNNKDVIAGSGYKAPSDVNPLYEALGLYDLGSSQVMQDFCSQLNVTPYQRKVMEAYGKAIHELAVKIGEKMAESLGIFGADFEDWPCQFRINKYHFTPKAIGSLGVQLHTDSGFLTILQDDESVGGLEVVNQSGSFVSVPPFHGTLLVNLGDIAKVWSNGRFFNVKHRVQCKEAAIRFSIATFMLGPRKGNVEAPIEMVDHDHPRLYQPFVYEDFRKLRVSKKMHTGEALELLRLW 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06256 298 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 5 281 - -
Vifa1g06256 298 Pfam 2OG-Fe(II) oxygenase superfamily 150 245 IPR044861 -
Vifa1g06256 298 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 147 249 IPR005123 -
Vifa1g06256 298 Gene3D - 2 294 IPR027443 -
Vifa1g06256 298 SUPERFAMILY Clavaminate synthase-like 4 295 - -
Vifa1g06256 298 Pfam non-haem dioxygenase in morphine synthesis N-terminal 5 76 IPR026992 -
Vifa1g06256 298 FunFam 2-oxoglutarate-dependent dioxygenase DAO 3 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06256 Vifa-Chr1 975752103 975753645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06256 5 270 Glycosyltransferase AT5G59530 28.723 1.23e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06256 K23947 - gmx:100783059 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06256 1 975752103 975753645 Vifa1g06256 1 975752103 975753645 ECH