Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01146 ATGTCTATTCCAGTGATTGATATGGGAAAAATTTGTGAGCAAGAGGAATGCAAAAAACTAAGAGAAGCATGTGAAAGGTGGGGTTGTTTCAGGATCATTAACCACTCCATTCCTGCAACCCTCATGGGTGAGATGAAGAAGGTGATTGGAGCTCTTCTTGATCTTCCTATGGAGCTCAAGAATCGCAACACAGAAGCCATTGCTGGCAGTGGTTACATGGCGCCAAGCGCAGTCAACCCATTCTATGAGGCCTTGGGACTCTATGACTTTGCTTCCCCACAAGCTATGCATAATTTTTGCTCTCAACTTGATGCATCACCCCACCAGAGGCAAATAATGGAGGCATATGGGCGAGCGATTCATGGTTTGGCAGTAAACCTAGGACAAAAAATGGCGGAATCACTAGGCGTTGTAGTTGCTGATTTCGAGGACTGGCCATGCCAGTTTAGAATTAACAAATATAACTTCACCCCAGAAGCAGTGGGGTCCACTGGAGTTCAAATTCACACCGATTCAGGATTCTTAACCATTCTTCAAGATGATGAAAATGTTGGTGGTCTTGAAGTCTTCAATACTTCTGGCTCATTTGTGCCAATTCCTCCTTCCCCAGGAACCCTCCTTGTAAATCTCGGAGACATTGCTCGTGTGTGGAGCAATGGAAGATTTTGCAATTTGATACACCGTGTGCAATGCAAGGAAGCGACCAAACGTCTTTCAATTGCTACATTTATGTTAGCACCCAGGAATAGGAATGTTGAGGCCCCAGAGGAATTGGTGGACCATCATCACCCACGTCTTTATCAACCTTTTATTTATGAAGATTATAGGAAGCTCAGAATTAGCAAGAAGATGGCCACTGGTGAAGCCCTTGAGTTATTCCGCTTGGCCTAG 891 0.4478 MSIPVIDMGKICEQEECKKLREACERWGCFRIINHSIPATLMGEMKKVIGALLDLPMELKNRNTEAIAGSGYMAPSAVNPFYEALGLYDFASPQAMHNFCSQLDASPHQRQIMEAYGRAIHGLAVNLGQKMAESLGVVVADFEDWPCQFRINKYNFTPEAVGSTGVQIHTDSGFLTILQDDENVGGLEVFNTSGSFVPIPPSPGTLLVNLGDIARVWSNGRFCNLIHRVQCKEATKRLSIATFMLAPRNRNVEAPEELVDHHHPRLYQPFIYEDYRKLRISKKMATGEALELFRLA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01146 296 SUPERFAMILY Clavaminate synthase-like 1 294 - -
Cca06g01146 296 Pfam non-haem dioxygenase in morphine synthesis N-terminal 3 74 IPR026992 -
Cca06g01146 296 Gene3D - 1 292 IPR027443 -
Cca06g01146 296 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 145 247 IPR005123 -
Cca06g01146 296 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 2 294 - -
Cca06g01146 296 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 2 294 - -
Cca06g01146 296 Pfam 2OG-Fe(II) oxygenase superfamily 148 244 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01146 Cca-Chr6 25734562 25737406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01146 1 295 Glycosyltransferase AT5G59530 24.691 3.95e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01146 K23947 - gmx:100783059 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01146 06 25734562 25737406 Cca06g01146 06 25734562 25737406 ECH