Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01417 ATGGAGGAGACCATTCCAGTGATTGATCTTGAGAAGATTTCAGAGAAAGAGGAGAGCAAGAAGCTAAGAGAGGCATGTGAAAAATGGGGTTGTTTCAGGATAACCAACCACTCTATTCCTTTAACACTCATGGCAGAGATGAAGAAAGTGGTTGGAGCTCTGCTTGACCTTCCTATGGAGATCAAGAAGCACAACACTGATGTCATTGCTGGCAGTGGTTACATGGCACCAAGTGCCATCAATCCTCTCTATGAGGCTTTGGGCCTCTATGACTTAGGTTCCTCACAAGCTGTTCAGGATTTCTGCTCTCAACTTGATGCCTCACCCCATCAGAGACAAATAATGGAGGCATATGGCAAGGCAATTCATGGTTTGGCAGTAAAAATAGGACAAAAGATGGCTGAATCAGTGGGCACAGTGGGTGCTGATTTCGAGGATTGGCTATGCCAATTTAGAATTAACAAATATAGCTTCACCCCAGAAGCTGTAGGGTCCCAAGGAGTTCAGCTACACACAGATTCAAGTTTCCTAACCATCCTTCAAGATGATGAGAATGTGGGTGGTCTTGAAGTGATGGACAATTCTGGCTTATTTGTGGCAGTCCCTCCATTACCAGAATCTCTCCTTGCCAATCTCGGAGATATTGCTCATGTGTGGAGCAATGGAAGGTTTTGCAATGTGAAGCACCGTGTACAATGCAAAGAAGCCACTACACGTTTCTCAATTGCCACATTTATGTTAGGACCCAGGAAGGGAAATGTTGAGGCTCCAGCAGAGTTGGTGGACCATGATCACCCACGTCTATATCACCCTTTTATATATGAAGATTATAGGAAGCTCAGAATTTACAAGAAGTTCCACACTGGCGAAGCCCTTGAGCTATTACGCTTGGCCTAG 897 0.4493 MEETIPVIDLEKISEKEESKKLREACEKWGCFRITNHSIPLTLMAEMKKVVGALLDLPMEIKKHNTDVIAGSGYMAPSAINPLYEALGLYDLGSSQAVQDFCSQLDASPHQRQIMEAYGKAIHGLAVKIGQKMAESVGTVGADFEDWLCQFRINKYSFTPEAVGSQGVQLHTDSSFLTILQDDENVGGLEVMDNSGLFVAVPPLPESLLANLGDIAHVWSNGRFCNVKHRVQCKEATTRFSIATFMLGPRKGNVEAPAELVDHDHPRLYHPFIYEDYRKLRIYKKFHTGEALELLRLA* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01417 298 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 5 281 - -
Rops1g01417 298 Pfam non-haem dioxygenase in morphine synthesis N-terminal 5 75 IPR026992 -
Rops1g01417 298 FunFam 2-oxoglutarate-dependent dioxygenase DAO 3 294 - -
Rops1g01417 298 SUPERFAMILY Clavaminate synthase-like 4 294 - -
Rops1g01417 298 Gene3D - 2 294 IPR027443 -
Rops1g01417 298 Pfam 2OG-Fe(II) oxygenase superfamily 150 246 IPR044861 -
Rops1g01417 298 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 143 249 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01417 Rops-Chr1 31347462 31356434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01417 5 277 Glycosyltransferase AT5G59530 27.682 9.17e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01417 K23947 - gmx:100783059 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01417 1 31347462 31356434 Rops1g01417 1 31347462 31356434 ECH