Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1579 ATGTCTTGGTGCACCATTGAGTCTGATCCTGGTGTCTTTACGGAACTTATACAACAAATGCAAGTGAAAGGTGTCCAGGTTGAGGAGTTGTATTCGTTGGACCTTGATTCTCTGAACCATCTTAGGCCAGTATATGGATTGATTTTTCTTTTCAAGTGGCGTCCAGGGGAAAAGGATGACCGTCTTGTAATCAAGGACCCAAACCCTAATTTATTTTTTGCCAGTCAGGTTATTAACAACGCATGTGCAACCCAAGCAATCCTGTCTATTCTCATGAATTGTCCAGATGTTGACATTGGTCCAGAGTTGTCAATGTTAAAAGAATTCACCAAGAACTTCCCCCCTGAACTCAAAGGGTTGGCTATCAATAACAGTGAAGCCATACGAACAGCCCATAACAGTTTTGCAAGACCTGAGCCCTTTGTTCCAGAGGAGCAGAAGGCTGCTGGGAAAGATGATGATGTATACCATTTCATAAGCTATCTACCAGTTGATGGCATTCTGTATGAATTGGATGGATTGAAGGAGGGACCCATTAGCCTGGGTCAATGCCCTGGTGGACAAGGTGACTTAGATTGGGTGCGTATGGTGCAACCAGTGATTCAGGAACGCATTGAAAGATATTCCAGAAGTGAGATCAGATTTAACCTCATGGCTATCATAAAGAATAGGAAAGATATATATACTGGCGAGCTGAAAGAGCTGCAGAAGAGGAGGGAACACATTTTGCACCAGTTGGCAGCCTTACAGTCAGAGAGAATGGTGGATAATAGCAACATTGAAGCTTTAAATAAATCCTTATCAGAAGTAAATGCTGGAATTGAGGGTGCTACAGAGAAGATATTAATGGAGGAGGAAAAATTCAAGAAGTGGAGAACGGAAAACATCCGCAGGAAACACAACTACATTCCCTTCTTATTTAATTTTCTCAAGATTCTTGCTGAAAAGAAGCAGTTGAAACCTCTTATAGAGAAAGCCAAGCAGAAAACAAACAACAGTAGGTGA 1005 0.4179 MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDLDSLNHLRPVYGLIFLFKWRPGEKDDRLVIKDPNPNLFFASQVINNACATQAILSILMNCPDVDIGPELSMLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPEPFVPEEQKAAGKDDDVYHFISYLPVDGILYELDGLKEGPISLGQCPGGQGDLDWVRMVQPVIQERIERYSRSEIRFNLMAIIKNRKDIYTGELKELQKRREHILHQLAALQSERMVDNSNIEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTNNSR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1579 334 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 3 206 IPR001578 GO:0004843|GO:0006511
Vvi4g1579 334 FunFam Ubiquitin carboxyl-terminal hydrolase 225 314 - -
Vvi4g1579 334 PIRSF Uch 1 334 IPR017390 GO:0004843|GO:0016579
Vvi4g1579 334 Coils Coil 218 252 - -
Vvi4g1579 334 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 152 163 IPR001578 GO:0004843|GO:0006511
Vvi4g1579 334 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 5 22 IPR001578 GO:0004843|GO:0006511
Vvi4g1579 334 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 40 52 IPR001578 GO:0004843|GO:0006511
Vvi4g1579 334 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 168 178 IPR001578 GO:0004843|GO:0006511
Vvi4g1579 334 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 76 93 IPR001578 GO:0004843|GO:0006511
Vvi4g1579 334 Gene3D - 225 314 - -
Vvi4g1579 334 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 223 IPR001578 GO:0004843|GO:0006511
Vvi4g1579 334 Coils Coil 260 280 - -
Vvi4g1579 334 Pfam Ubiquitin carboxyl-terminal hydrolases 276 319 IPR041507 -
Vvi4g1579 334 FunFam Ubiquitin carboxyl-terminal hydrolase 1 224 - -
Vvi4g1579 334 SUPERFAMILY Cysteine proteinases 2 223 IPR038765 -
Vvi4g1579 334 CDD Peptidase_C12_UCH37_BAP1 3 220 - -
Vvi4g1579 334 Gene3D - 1 224 IPR036959 GO:0004843|GO:0006511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1579 K05610 - vvi:100251772 664.07