Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0764 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0766 . . . . . . . . . Aev08g0527 . Ahy20g2118 . Aip10g02499 . . . . . . . . . . . . . . . . . . . . . Dod09g1893 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g3973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0768 . . . . . . . . . . . Ahy20g2119 . Aip10g02500 . . . Amo20g2738 . . . . . . . . . . . . . . . . . Dod09g1896 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g3974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0769 . . . . . . . . . Aev08g0526 . Ahy20g2120 . Aip10g02501 . . . . . . . . . . . . . Bva06g02500 . . . . . . . Dod09g1898 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g3975 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g0953 . . . . . . . . . . . . . . . . . . .
Vvi4g0770 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0771 . . . . . . . . . Aev08g0524 . Ahy20g2122 . Aip10g02502 . . . Amo20g2742 . . . . . . . . . . . . . . . . . Dod09g1900 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g3976 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0772 . . . . Adu08g02399 . . . . . . . . . . . . . . . Arst8g03297 . . . . . Bva10g00261 . Car05g03047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu9g01802 . Lasa5g04191 . . . . . . . . . . . Mal2g0754 . Mepo3g07536 . Mesa9g05221 . . . Mtr3g4015 . Phac9g00539 . Phco7g00857 . . . Psa5g0562 . Pste2g02031 . Pte3g01052 . . . Pumo10g00879 . Pvu9g1049 . Rops10g01507 . Seca4g00809 . Spst9g00891 . . . . . Tpr7g0493 . Trre5g05360 . . . Vian4g01882 . Vifa2g04141 . Vimu10g02823 . Viun9g02929 . Vivi3g00018 . . .
Vvi4g0773 . . . . Adu08g02400 . . Aed6g1039 . . . . . . . . . . . Apr9g0091 Arst8g03298 . . . Bisa09g1306 . Bva10g00262 . Car05g03046 . . Cca05g00629 . . . . . . Glsi08g1487 . Gma14g01247 Gma17g01858 . . Gso14g1083 Gso14g1083 . . . . . . . . . . . . . . Lapu9g01803 . Lasa5g04187 . . . . . . . . . . . Mal2g0755 . Mepo3g07535 . Mesa9g05220 . . . Mtr3g4014 . . . Phco7g00856 . . . Psa5g0588 . Pste2g02029 . . Pte1g01637 . . Pumo10g00877 . Pvu9g1048 . Rops10g01506 . Seca4g00811 . Spst9g00890 . . Ssu5g0675 . . Tpr7g0495 . Trre5g05359 . . . Vian4g01883 . Vifa2g04138 . Vimu10g02824 . Viun9g02930 . Vivi3g00017 . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Bva Bva06g02500 Chr06 15861061 15868641 +
Vvi Vvi4g0764 Chr4 8653870 8658091 +
Vvi Vvi4g0765 Chr4 8709993 8711285 +
Vvi Vvi4g0766 Chr4 8723240 8727233 +
Aev Aev08g0527 Chr08 2984448 2990067 -
Ahy Ahy20g2118 Chr20 118603206 118609812 +
Aip Aip10g02499 Chr10 111251534 111257608 +
Dod Dod09g1893 Chr09 40481532 40487374 +
Lja Lja1g3973 Chr1 50432242 50439263 +
Vvi Vvi4g0767 Chr4 8731863 8732842 +
Vvi Vvi4g0768 Chr4 8738287 8739489 +
Ahy Ahy20g2119 Chr20 118613292 118618807 +
Aip Aip10g02500 Chr10 111260586 111265528 +
Amo Amo20g2738 Chr20 125552620 125567693 +
Dod Dod09g1896 Chr09 40523987 40529626 +
Lja Lja1g3974 Chr1 50446780 50450294 +
Vvi Vvi4g0769 Chr4 8773641 8788445 -
Aev Aev08g0526 Chr08 2977910 2983852 +
Ahy Ahy20g2120 Chr20 118618545 118624087 -
Aip Aip10g02501 Chr10 111265581 111270948 -
Bva Bva06g02500 Chr06 15861061 15868641 +
Dod Dod09g1898 Chr09 40540143 40547734 -
Lja Lja1g3975 Chr1 50451082 50456537 -
Sto Sto5g0953 Chr5 6414912 6418998 -
Vvi Vvi4g0770 Chr4 8821885 8822142 +
Vvi Vvi4g0771 Chr4 8831638 8849653 +
Aev Aev08g0524 Chr08 2956451 2957968 -
Ahy Ahy20g2122 Chr20 118699552 118701725 +
Aip Aip10g02502 Chr10 111328167 111339940 +
Amo Amo20g2742 Chr20 125663952 125665711 +
Dod Dod09g1900 Chr09 40561458 40566049 +
Lja Lja1g3976 Chr1 50471097 50476919 +
Vvi Vvi4g0772 Chr4 8856880 8866278 +
Adu Adu08g02399 Chr08 39666277 39668752 +
Arst Arst8g03297 Chr8 44030699 44034025 +
Bva Bva10g00261 Chr10 3630655 3634487 +
Car Car05g03047 Chr05 75311311 75315463 -
Lapu Lapu9g01802 Chr9 32837567 32840925 +
Lasa Lasa5g04191 Chr5 639238975 639241811 -
Mal Mal2g0754 Chr2 8800096 8803291 +
Mepo Mepo3g07536 Chr3 88729211 88733596 -
Mesa Mesa9g05221 Chr9 86962529 86965901 -
Mtr Mtr3g4015 Chr3 53892918 53897110 -
Phac Phac9g00539 Chr9 3517404 3520689 -
Phco Phco7g00857 Chr7 6799280 6801957 -
Psa Psa5g0562 Chr5 45705496 45708345 +
Pste Pste2g02031 Chr2 20566270 20570871 -
Pte Pte3g01052 Chr3 8959483 8962085 +
Pumo Pumo10g00879 Chr10 11534803 11538090 -
Pvu Pvu9g1049 Chr9 15543720 15547010 -
Rops Rops10g01507 Chr10 28382145 28386133 -
Seca Seca4g00809 Chr4 13447911 13450502 +
Spst Spst9g00891 Chr9 7817089 7819638 -
Tpr Tpr7g0493 Chr7 4187132 4191038 +
Trre Trre5g05360 Chr5 54369792 54372746 -
Vian Vian4g01882 Chr4 35310222 35312914 +
Vifa Vifa2g04141 Chr2 1209234028 1209236738 -
Vimu Vimu10g02823 Chr10 39558489 39561191 +
Viun Viun9g02929 Chr9 37419243 37422458 +
Vivi Vivi3g00018 Chr3 228315 232252 -
Vvi Vvi4g0773 Chr4 8878852 8881902 +
Adu Adu08g02400 Chr08 39672169 39676215 +
Aed Aed6g1039 Chr6 14725165 14729417 +
Apr Apr9g0091 Chr9 1138237 1142275 +
Arst Arst8g03298 Chr8 44037218 44041306 +
Bisa Bisa09g1306 Chr09 18799263 18802492 -
Bva Bva10g00262 Chr10 3637096 3640664 +
Car Car05g03046 Chr05 75296169 75299496 -
Cca Cca05g00629 Chr05 14841198 14844316 -
Glsi Glsi08g1487 Chr08 10819784 10822536 +
Gma Gma14g01247 Chr14 20682221 20685278 -
Gma Gma17g01858 Chr17 31876629 31879738 +
Gso Gso14g1083 Chr14 19262071 19266336 -
Gso Gso14g1083 Chr14 19262071 19266336 -
Lapu Lapu9g01803 Chr9 32848629 32852445 +
Lasa Lasa5g04187 Chr5 639041689 639044735 -
Mal Mal2g0755 Chr2 8819385 8822544 +
Mepo Mepo3g07535 Chr3 88718328 88721322 -
Mesa Mesa9g05220 Chr9 86943592 86946577 -
Mtr Mtr3g4014 Chr3 53878256 53882187 -
Phco Phco7g00856 Chr7 6788454 6791336 -
Psa Psa5g0588 Chr5 47318602 47323026 +
Pste Pste2g02029 Chr2 20526472 20530117 -
Pte Pte1g01637 Chr1 37973397 37978129 -
Pumo Pumo10g00877 Chr10 11517575 11521784 -
Pvu Pvu9g1048 Chr9 15531610 15535487 -
Rops Rops10g01506 Chr10 28369759 28373260 -
Seca Seca4g00811 Chr4 13464385 13468441 +
Spst Spst9g00890 Chr9 7806597 7809517 -
Ssu Ssu5g0675 Chr5 16049545 16051932 -
Tpr Tpr7g0495 Chr7 4206938 4211576 +
Trre Trre5g05359 Chr5 54355341 54358475 -
Vian Vian4g01883 Chr4 35320297 35323262 +
Vifa Vifa2g04138 Chr2 1208142538 1208145377 -
Vimu Vimu10g02824 Chr10 39567795 39571634 +
Viun Viun9g02930 Chr9 37431126 37435099 +
Vivi Vivi3g00017 Chr3 210451 214123 -
Pte Pte1g01637 Chr1 37973397 37978129 -
Pte Pte1g01637 Chr1 37973397 37978129 -