Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2742 ATGGAACATTCTAGAGATTGGAATGGTCAAGGTAGAAGTCTAAAGAGAAAATCACAAGAAAATGGAGATCATAAACTCCTCAATAACTTTTCTCTTGATGACCTCAATGAGGATCTGTTTGAAAGGATACTTTCATGGCTTCCAACTTCCACATTCTTTCGCCTTACTTCCGTGTCGAAACGGTGGAATTCGGTTGCTGATTCGGCTAGTTTCAAGCTTGCCTGCTCAAGCATTCCTTCCAGGGATCCTTGGTTCTTCATGGTTGCTCCCAACCTTAACCAATCTATAATCTTTGACTCTGCTGAAAGAACTTGGAAAAGACTCAATCACCCCCCACTTTTACATCAAGATTCTAACAAAGGTTGTATGCCGGTTGCTGCCTCCGGTGGCTTGATTTGCTACCGTAATTCATCAGGAAGCTTCATTGTAAGCAACCCTGTGACAGGAACTTGTAGTGAACTCCCTCTGCTTGAGTTTTCCCCTCAAAATCAACCACTCAATGCAATTGTGATGAGCACAACCACCAAAGACCAACAACTATACTACAAAATTGTGTTAGTCTTCGGAGAACTTCAGAATCTTGTGTTTAGAGTCTACAATTCTTTCTCTGGAAGTTGGGAAGGTGAGACTTCTCTAAGGAGAAAAGTTGATGATTGTTCTATGGAGTTTGATTCGACCGAGGACGACAATGTTGTATACTTCCTTAGTAAGGCTGGTATTGTGGTAGCAAGCAACATGCAGAGAAGCCCTTCAAAGCAATATTCGTCGGTCATTACCGACAAAAATGGCGAAGAGGTTGTCTATTTTCTTAGCTCCACAGGGACAATAGTAGCTTGCAACCTGACAAGCAAGTGCTACATCGAGTATCCAAGGTTGTTGCCTGTTCTGAGTGAGTATTCAATTGATGTTGTGGAGTGTAATGGGGAGATGCTAGTTGTTCTGTTATCAGAGTTCTTGGAAACCGCGAGTCTTCGTGTGTGGAAGTATGATGAAGCTAAAAGAGGGTGGCACCAGATTGCAGCAATGCCTGCATCAATTTCTCATGAATGGTATGGAAAGAAAGTGGATATTAACTGTGTAGGAGCTGGTAACCAGATATTCATATGCTTGAACTCCTCTGAGCTATGTACTTATGTTCTGTGTGATTTGGTTAGCAACAACTGGGTTGAATTGCCAAATTGTTGCATAAATGGTGAAGTCATAGACTTTATGTCTTCATTTTCATTTGAGCCTAGGATAGAGGCTTCTGTATGA 1254 0.4179 MEHSRDWNGQGRSLKRKSQENGDHKLLNNFSLDDLNEDLFERILSWLPTSTFFRLTSVSKRWNSVADSASFKLACSSIPSRDPWFFMVAPNLNQSIIFDSAERTWKRLNHPPLLHQDSNKGCMPVAASGGLICYRNSSGSFIVSNPVTGTCSELPLLEFSPQNQPLNAIVMSTTTKDQQLYYKIVLVFGELQNLVFRVYNSFSGSWEGETSLRRKVDDCSMEFDSTEDDNVVYFLSKAGIVVASNMQRSPSKQYSSVITDKNGEEVVYFLSSTGTIVACNLTSKCYIEYPRLLPVLSEYSIDVVECNGEMLVVLLSEFLETASLRVWKYDEAKRGWHQIAAMPASISHEWYGKKVDINCVGAGNQIFICLNSSELCTYVLCDLVSNNWVELPNCCINGEVIDFMSSFSFEPRIEASV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2742 417 ProSiteProfiles F-box domain profile. 29 74 IPR001810 GO:0005515
Amo20g2742 417 SUPERFAMILY F-box domain 26 89 IPR036047 GO:0005515
Amo20g2742 417 PANTHER F-BOX PROTEIN FAMILY, ATFBX13-LIKE PROTEIN 25 417 - -
Amo20g2742 417 SMART fbox_2 35 75 IPR001810 GO:0005515
Amo20g2742 417 Pfam F-box domain 32 71 IPR001810 GO:0005515
Amo20g2742 417 Gene3D - 26 72 - -
Amo20g2742 417 SUPERFAMILY Galactose oxidase, central domain 95 345 IPR011043 -
Amo20g2742 417 PANTHER F-BOX/KELCH-REPEAT PROTEIN 25 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2742 Amo-Chr20 125663952 125665711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2742 - - gmx:100777105 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2742 20 125663952 125665711 Amo20g2742 20 125663952 125665711 ECH