Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3976 ATGCTTGTCTCTGGAGTATCATGGGATCTCAAGTGGCTACTGCAGTTTGTGATCTCCGCGTTTGTGGTGGTTCTTGGATTGCACACTCTCGTCAAGAATACGGCGTCAAAGTACTTTGAGGTCGACGCCAATTTCGACGCCATGCCTGGCCTTCTCATGGATGATACCGTTTGTGTCCTCTGCCGCAAAAACGCCACCAAGAAGTGCTCTCGCTGCAAATCCGTTCGATACTGCTCAGAAGCATGCCAACAGTTGCATTGGAAATCTGAACATAAGATGAAATGCAAGGCTTTACAGAGCAACAGTGCAATAAGCTTGGCTAAAGCTTCCGCAGCTGTGAATAAAACCACATCTTCAATTTCCCTGATCCCGCAATGTGGTCGTGGAACTTTCAGGCCTATCAAGCAGCCTAAAAATCCTCTCTTTCCTTATGATGAGTTTGTCAAATTGTTTAACTGGGACAAGCCAGGATTTCCTCCCTGTGGACTCTTGAATTGTGGAAACAGCTGCTTTGCGAATGTGGTTCTCCAATGTCTTTCATTCACAAAGCCACTTATTGCCTACTTGTTGGAGAAGGGTCACCGCAAAGAATGCTGCCATAATGATTGGTGCTTTCTATGTGAATTTGAAATCCATGTTGAAAGGGCAAGGCTAAGTTCACAAGCGTTTTCTCCTATGAATATTCTGTCTCGTTTGCCTAATATTTCGGGTACACTGGATTGTGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTGCCATTGATACTATGCAATCTATTTGCCTTGAGGAATTTGGTGGAGAAAAAGCTGTGCCTCCTAACCTTCAAGAAACAACCCTTATTCAACACATTTTTGGTGGACACCTTCAATCTGAGGTGATTTGCACAGAATGTGAGAAGAATTCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGTTAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGGTGCAAAGGTTATGTCAAGGCATGGAAACGTCTCACAGTGAAACGGGCTCCAAATATTCTTACTATTGCCTTAAAAAGATTTCAGAGTGGGAGTTTTGGAAAACTTAACAAGAGAGTAACTTTCCCCGAGACTTTGGATCTTAGCCCTTACACAAGTGATGTTGGAGATGGATCTGACATCTATAAGCTTTATGCCGTTGTAGTCCATATTGATATGCTGAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCCAAGGAAACTGGTATAGAATTGATGATTGGAAGGTTATGGGTGTGGAATTGGAGGAGGTGCTTTCTCAGGGCGCATACATGCTGCTGTATAGCAGGGTTAATGCACGACCCTCAGGACTTCAAAGTATTGAATCTTCAGAGGCGGCAGATATGAAAACATTCGAAGTGGGAGTGCAGCCTGGCTCTTCTAAACAAGCTGAGTGCTTTTCAGATACGAATACTGCGACTTACAGCAAAGGGTGTGAGGCTCTTCCATTTGGTATTAGTCCAGAGTTGAAGATTTCTGCCAGTGAATCTGTGTCTTTGACCGAAATGAGCTGTGGTGCAAAAAGCGAGCATTCTAATGATATGGATGTTGAGGTTGCAAATGAAACTTCCTCTAGTGGCGTTGAATCATCTTATATCTGCAGTTCTCAAGCTGCCGAACATTGGGGGGATATAGATATTACCAGATCAAATCCATGCTCATCTGTTTTAGGAGAGATTTCAGGCTGTAAAAAAGAGCAAGATGATAGTGATATGGCTAAATCTGCTCCTTCTCTAGTTTTGCCAAATGGCTTCTCGGGCTTTGATAAGGATTCTTATGTTTCAGAGGATTATCAGAACTTAAGGGGAGATTCAGAACATGTAGATGCGATTGAGTGCAAGTCAATTGCAGCAAAAGACAATGTGAAGCTTAGCAATGGGTATGCCAGTTCAAACATACATGATATGCCTGTTGAAGATGGTGGTGCTGTATTTTCTGGGGTCGGTTCTTGTTCGAGTGAAACATCCTCAGCTGAGATGCATCAATTGAAGCGGAGATTGCCATTTTACAGTTCTGAAGCTGAGGAAGGAAATGAACTCAATAAAATGGAATCAGCAGGGAACAAGTTAATAAAGTAG 2187 0.4252 MLVSGVSWDLKWLLQFVISAFVVVLGLHTLVKNTASKYFEVDANFDAMPGLLMDDTVCVLCRKNATKKCSRCKSVRYCSEACQQLHWKSEHKMKCKALQSNSAISLAKASAAVNKTTSSISLIPQCGRGTFRPIKQPKNPLFPYDEFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTKPLIAYLLEKGHRKECCHNDWCFLCEFEIHVERARLSSQAFSPMNILSRLPNISGTLDCGRQEDAHEFMRFAIDTMQSICLEEFGGEKAVPPNLQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTVKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGSFGKLNKRVTFPETLDLSPYTSDVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMGVELEEVLSQGAYMLLYSRVNARPSGLQSIESSEAADMKTFEVGVQPGSSKQAECFSDTNTATYSKGCEALPFGISPELKISASESVSLTEMSCGAKSEHSNDMDVEVANETSSSGVESSYICSSQAAEHWGDIDITRSNPCSSVLGEISGCKKEQDDSDMAKSAPSLVLPNGFSGFDKDSYVSEDYQNLRGDSEHVDAIECKSIAAKDNVKLSNGYASSNIHDMPVEDGGAVFSGVGSCSSETSSAEMHQLKRRLPFYSSEAEEGNELNKMESAGNKLIK* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3976 728 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 625 - -
Lja1g3976 728 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 19 625 - -
Lja1g3976 728 SUPERFAMILY Cysteine proteinases 157 475 IPR038765 -
Lja1g3976 728 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 161 467 IPR028889 -
Lja1g3976 728 CDD Peptidase_C19E 160 465 - -
Lja1g3976 728 Pfam MYND finger 58 95 IPR002893 -
Lja1g3976 728 ProSiteProfiles Zinc finger MYND-type profile. 58 95 IPR002893 -
Lja1g3976 728 Pfam Ubiquitin carboxyl-terminal hydrolase 161 464 IPR001394 GO:0004843|GO:0016579
Lja1g3976 728 ProSitePatterns Zinc finger MYND-type signature. 58 95 IPR002893 -
Lja1g3976 728 Gene3D Cysteine proteinases 157 475 - -
Lja1g3976 728 Gene3D - 52 101 - -
Lja1g3976 728 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 162 177 IPR018200 GO:0004843|GO:0006511
Lja1g3976 728 SUPERFAMILY HIT/MYND zinc finger-like 55 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3976 Lja-Chr1 50471097 50476919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3976 5 486 Miscellaneous Gene Families AT4G31670 62.041 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3976 K11855 - gmx:100810577 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3976 1 50471097 50476919 Lja1g3976 1 50471097 50476919 ECH