Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0675 ATGGCTCCAAGCTTTGATTTTTCCAATAGGTGGATGAAGGAGACTCAGAAGGGTAGcccagtggtggtgacaatggagAACCCCACTTTCTCTGTTGTGGAGATTAATGGTGCTGATGCTGCATTCAGGCCAGTGGAGAAAACCCGTGGCAAGAATGCTAAGCAAGTCACATGGTTCTTGTTTCTCAAGGCTTACCATGTTATTGGATGTGTCACTTGGTTTGCCACGGTTATGTGGTCTCTGCTGGGAGCTATAAAGAAGAGGTTGATTCATAGGGAGGGTGTGGCCTTGGAGAGTGATAAGTTGGAGAAAGGGAAGGTGCTGTTTAGGGTCATCAAGGTGTTCCTTGTGAGTTCTTTGGTGGTTCTGGTGTTTGAGGTGGTGGCTTACTTGCAAGGTTGGCATTTCAGGAATCCCAGTGTGCACATTCCTCGTACCACGGATTTGGAAGGCTTGATGCACTTGGTTTATGTTGCTTGGTTGAGGTTTCGTGGTGAGTACATTGCTCCCCCAATTCAAGCACTTTCaaagttttgtgttgttttgttcCTTATACAATCAGTGGACCGTATGGTGCTTTGCTTTGGGTGCTTTTGGATAAAGTACAACAAGATTAAGCCAAAGATTGACGGGGATCTCCTCAAGGTTGATGATATTGAAGGATCTGCATGTAACCATCCCATGGTTCTGGTTCAGATGCCCATGTGTAATGAGAGGGAGGTGTATGAGCAGTCTATTTCTGCAGTATGCCAAATTGATTGGCCAAGGGACCGATTACTGATTCAAGTACTTGATGATTCTGATGATGAGAGCGTACAGTGGTTAATTAAGACCGAGGTCACAAAATGGAGCCAAAAGGGAATCAACATAATCTACAGGCATCGCTTAGTCCGGACCGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGCTGTGACTATGTGAAAGACTATGAGTTTGTTGCAATTTTCGATGCAGATTTCCAGCCAAATCCTGATTTTCTTAAGCAAACAGTGccatattttgagGACAATCCTGAATTAGGCCTTGTCCAAGCTAGATGGGCTTTTGTGAATAAGGATGAGAACTTGTTGACACGTCTCCAGAACATTAATTTATGCTTCCATTTTGAGGTAGAGCAACAGGTCAATGGggcatttctcaatttttttggatttaatGGAACTGCTGGTGTTTGGAGAATCAAGGCCCTGGAAGAGTCCGGCGGCTGGCTCGAGAGGACAACCGTAGAAGATATGGATATTGCCGTCCGAGCACATCTCAATGGTTGGAAATTTATCTTTGTAAATGATGTAAAGGTACTTTGTGAAGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAGCACCGGTGGCATTCTGGTCCAATGCAACTTTTCAGATTGTGTCTTCCAGCAATTTTGAGATCTAAGGTATATCTGATACCCAGctaa 1455 0.4206 MAPSFDFSNRWMKETQKGSPVVVTMENPTFSVVEINGADAAFRPVEKTRGKNAKQVTWFLFLKAYHVIGCVTWFATVMWSLLGAIKKRLIHREGVALESDKLEKGKVLFRVIKVFLVSSLVVLVFEVVAYLQGWHFRNPSVHIPRTTDLEGLMHLVYVAWLRFRGEYIAPPIQALSKFCVVLFLIQSVDRMVLCFGCFWIKYNKIKPKIDGDLLKVDDIEGSACNHPMVLVQMPMCNEREVYEQSISAVCQIDWPRDRLLIQVLDDSDDESVQWLIKTEVTKWSQKGINIIYRHRLVRTGYKAGNLKSAMSCDYVKDYEFVAIFDADFQPNPDFLKQTVPYFEDNPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGAFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFVNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAILRSKVYLIPS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0675 484 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 446 IPR029044 -
Ssu5g0675 484 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 1 479 - -
Ssu5g0675 484 Pfam Glycosyl transferase family group 2 321 465 IPR001173 -
Ssu5g0675 484 PANTHER - 1 479 - -
Ssu5g0675 484 SUPERFAMILY Nucleotide-diphospho-sugar transferases 226 482 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0675 Ssu-Chr5 16049545 16051932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0675 1 479 Miscellaneous Gene Families AT4G31590 76.923 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0675 - - gmx:100797495 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0675 5 16049545 16051932 Ssu5g0675 5 16049545 16051932 ECH