Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04138 ATGGCTCCAAGATTGGATTTTTCTAGTTGGTGGATGAAGGATACACAGAAGGGGACACCAGTGGTGGTGAAAATGGAGAACCCCAATTTCTCTGTTGTTGAGATTAATGGTGCAGATGCTGCATTTAGGCCGGTGGAGAAGAATCGTGGCAAGAATGCTAAGCAAGTTACATGGGTTTTGCTTCTCAAGGCGCATCGTGCGGTTGGTTGTGTTACTTGGTTAGTGACAGTTCTTTGGGATTTGCTTGGAGGGATTAAGAAAAGGGTGATTCAGAGACAAGGAGTGGCTGTTGAGAAAGGGAAGTTGTTGTTTAGGATCATTAGTTTGTTTTTAGTGATTTCTTTGGCTGTTTTGGCTTTTGAGGTTGTTGCTTACCTTCAAGGTTGGCATTTTGGGAATCATAATTTGCACATTCCTCATAGTTCTGATTTTGAAAGGTTCTTCCATGTGGCTTATGTTGCTTGGTTGACGTTCCGTGCTGAATACATTGCTCCGCCAATTAAGGCTCTTTCCAAGTTTTGTATTGTTTTGTTTGTTATCCAATCTGTCGACCGTCTGGTGCTTTGTTTGGGGTGCTTTTGGATCAAACTCAGGAAGGTTAAGCCAATAATTAGTGGGGACCCCTTCAAGGTTGATGATGTTGAAGGATCTGTATGCAAGTGTCCAATGGTCTTGGTTCAAATTCCAATGTGCAATGAGAGGGAGGTGTATGAACAATCTATTTCTGCGGTCTGCCAAATCGACTGGCCAAGGGATCGTTTACTGATTCAAGTACTTGACGATTCTGATGACGAGAGCATACAATGGTTAATTAAGGCTGAGGTCTCTAAGTGGAACCAAAAGGGAATTAACATAATCTATCGGCATCGCCAAATCAGGACCGGATACAAAGCTGGAAATCTTAATTCTGCAATGAGCTGTGACTATGTGAAAGACTATGAATTTGTTGCAATATTTGATGCAGACTTTCAACCAAATCCTGATTTTCTTAAGCAAACTGTGCCACATTTCAAGGACAATCCTGAACTAGGTTTGGTCCAAGCTAGATGGTCTTATGTGAACAAGGATGAGAATTTGTTGACTCGTCTTCAAAACATAAATTTATGCTTCCATTTTGAAGTAGAACAGCAGGTCAATGGGGTGTTTCTTAATTTTTTTGGTTTCAATGGAACTGCTGGTGTTTGGAGAATCAAAGCCCTTGAAGAGTCAGGAGGCTGGCTAGAGAGGACAACTGTAGAAGATATGGACATTGCTGTCCGAGCTCATCTCAATGGTTGGAAATTTATCTTCCTAAATGATGTAAAGGTACTTTGTGAAGTTCCCGAGTCATATGAAGCTTACAGAAAGCAACAACACCGCTGGCATTCCGGGCCTATGCAACTTTTCAGACTGTGTCTCCCAGCAATTTTGAAATCTAAGGTATCACCATGGAAGAAAGCAAACTTAATTCTGCTATTTTTTCTGCTAAGGAAATTAATCCTTCCCTTTTACTCGTTCACTTTATTTTGCATAATCCTTCCTCTAACCATGTTTGTCCCAGAGGCTGAACTCCCTTTATGGTTAATCTGCTATGTTCCGGTATTCATGTCAATCCTGAACATTCTTCCCGCACCTAAATCTTTTCCTTTTATTGTTCCCTACCTCCTTTTTGAAAACACCATGTCTGTTACTAAATTCAATGCAATGGTATCTGGTCTTTTCCAATTGGGAAGCTCTTATGAATGGATTGTCACAAAGAAAGCTGGAAGGTCGTCAGAGTCTGATTTACTTGCTGCTGCAGAAAGGGACACTAAGTCAATAGAACAACAAAAGATCCATAGAGGATCTTCTGACAGCGAACTTGTTGAGTTACACCAATTGAAGGAACTCAAAGAAGCAGCTGTAGAACCTGTTAAGAAAGCAAATAAGATATATAAGAAAGAACTGACTTTGGCATTCCTTCTTCTCACTGCTTCTGTCAGAAGTCTGTTATCTGCACAAGGAGTTCATTTCTACTTTCTGCTTTTCCAAGGGATAACTTTCCTCCTCGTAGGCCTTGATTTGATTGGAGAACAAATGAGCTAG 2064 0.4084 MAPRLDFSSWWMKDTQKGTPVVVKMENPNFSVVEINGADAAFRPVEKNRGKNAKQVTWVLLLKAHRAVGCVTWLVTVLWDLLGGIKKRVIQRQGVAVEKGKLLFRIISLFLVISLAVLAFEVVAYLQGWHFGNHNLHIPHSSDFERFFHVAYVAWLTFRAEYIAPPIKALSKFCIVLFVIQSVDRLVLCLGCFWIKLRKVKPIISGDPFKVDDVEGSVCKCPMVLVQIPMCNEREVYEQSISAVCQIDWPRDRLLIQVLDDSDDESIQWLIKAEVSKWNQKGINIIYRHRQIRTGYKAGNLNSAMSCDYVKDYEFVAIFDADFQPNPDFLKQTVPHFKDNPELGLVQARWSYVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAILKSKVSPWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPLWLICYVPVFMSILNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDTKSIEQQKIHRGSSDSELVELHQLKELKEAAVEPVKKANKIYKKELTLAFLLLTASVRSLLSAQGVHFYFLLFQGITFLLVGLDLIGEQMS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04138 687 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 217 441 IPR029044 -
Vifa2g04138 687 SUPERFAMILY Nucleotide-diphospho-sugar transferases 224 501 IPR029044 -
Vifa2g04138 687 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 147 684 - -
Vifa2g04138 687 FunFam probable xyloglucan glycosyltransferase 5 215 440 - -
Vifa2g04138 687 Pfam Glycosyl transferase family group 2 316 518 IPR001173 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04138 Vifa-Chr2 1208142538 1208145377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04138 1 687 Miscellaneous Gene Families AT4G31590 80.231 0.0 1112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04138 - - gmx:100776577 1225.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04138 2 1208142538 1208145377 Vifa2g04138 2 1208142538 1208145377 ECH