Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0755 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1763 . . . . . . . . . . . . . . . . . . .
Vvi4g0756 Acco05g1209 . Accr3g01747 . Adu07g01127 . . . . Aev07g2231 . Ahy17g1281 . Aip07g01213 Alju07g1160 . . Amo17g0655 . . Arst7g01521 . Bach3g01024 . Bisa05g2134 . . . . . . . Dere05g1167 . . . Enph7g0206 . Glsi10g1831 . . . . . . . . . . . . . . . . . . . . . Lapu6g02248 . Lasa2g01406 . . Lele26g1417 . Lele28g1401 . . . . . . . . Mepo7g02006 . Mesa17g03320 . Mibi08g0995 . . . Phac8g03234 . Phco3g00500 . Prci2g2276 . . . Pste8g01567 . . . . . Pumo9g02560 . Pvu8g2519 . Rops9g01107 . Seca6g02462 . Spst8g00266 . . . . . . . . . . . Vian7g01759 . Vifa1g01559 . Vimu1g01217 . Viun8g02042 . Vivi7g01690 . . .
Vvi4g0757 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0758 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0759 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0760 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0761 . . . . . . . . . . . Ahy20g2117 . Aip10g02494 . . . Amo20g2733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g3972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0762 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0763 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0754 Chr4 8461866 8466086 +
Vvi Vvi4g0755 Chr4 8474777 8478265 -
Sto Sto5g1763 Chr5 12754433 12756189 +
Vvi Vvi4g0756 Chr4 8484127 8488395 +
Acco Acco05g1209 Chr05 25056429 25058946 -
Accr Accr3g01747 Chr3 22780363 22783030 +
Adu Adu07g01127 Chr07 16401075 16403510 +
Aev Aev07g2231 Chr07 23315843 23318212 -
Ahy Ahy17g1281 Chr17 19938838 19942540 +
Aip Aip07g01213 Chr07 18169564 18172538 +
Alju Alju07g1160 Chr07 35086104 35088640 -
Amo Amo17g0655 Chr17 14124386 14127895 +
Arst Arst7g01521 Chr7 16510290 16512957 +
Bach Bach3g01024 Chr3 20772375 20775091 -
Bisa Bisa05g2134 Chr05 47595770 47599831 -
Dere Dere05g1167 Chr05 18734635 18737552 +
Enph Enph7g0206 Chr7 7863729 7867832 -
Glsi Glsi10g1831 Chr10 12685181 12689388 +
Lapu Lapu6g02248 Chr6 22006168 22009079 +
Lasa Lasa2g01406 Chr2 453978280 453979375 -
Lele Lele26g1417 Chr26 9947600 9947968 +
Lele Lele28g1401 Chr28 10117860 10120021 +
Mepo Mepo7g02006 Chr7 30302561 30305465 -
Mesa Mesa17g03320 Chr17 58586057 58588976 -
Mibi Mibi08g0995 Chr08 23286067 23289223 -
Phac Phac8g03234 Chr8 40651644 40654089 +
Phco Phco3g00500 Chr3 3888495 3890414 -
Prci Prci2g2276 Chr2 17926585 17931392 +
Pste Pste8g01567 Chr8 8951970 8955192 +
Pumo Pumo9g02560 Chr9 60621774 60624974 +
Pvu Pvu8g2519 Chr8 55739438 55741857 +
Rops Rops9g01107 Chr9 18180181 18182897 +
Seca Seca6g02462 Chr6 87334520 87338652 +
Spst Spst8g00266 Chr8 2327306 2329570 -
Vian Vian7g01759 Chr7 27547408 27549190 +
Vifa Vifa1g01559 Chr1 257075016 257076147 -
Vimu Vimu1g01217 Chr1 9502419 9504191 +
Viun Viun8g02042 Chr8 31029333 31031616 -
Vivi Vivi7g01690 Chr7 74883724 74886708 -
Vvi Vvi4g0757 Chr4 8508975 8513037 +
Vvi Vvi4g0758 Chr4 8516604 8517115 +
Vvi Vvi4g0759 Chr4 8593516 8597987 +
Vvi Vvi4g0760 Chr4 8600289 8620211 +
Vvi Vvi4g0761 Chr4 8622220 8624152 +
Ahy Ahy20g2117 Chr20 118443519 118448816 -
Aip Aip10g02494 Chr10 111075496 111081139 -
Amo Amo20g2733 Chr20 125418097 125423004 -
Lja Lja1g3972 Chr1 50415652 50426531 +
Vvi Vvi4g0762 Chr4 8627884 8628150 +
Vvi Vvi4g0763 Chr4 8638753 8638938 -
Acco Acco05g1209 Chr05 25056429 25058946 -
Accr Accr3g01747 Chr3 22780363 22783030 +
Adu Adu07g01127 Chr07 16401075 16403510 +
Aev Aev07g2231 Chr07 23315843 23318212 -
Ahy Ahy17g1281 Chr17 19938838 19942540 +
Aip Aip07g01213 Chr07 18169564 18172538 +
Alju Alju07g1160 Chr07 35086104 35088640 -
Amo Amo17g0655 Chr17 14124386 14127895 +
Arst Arst7g01521 Chr7 16510290 16512957 +
Bach Bach3g01024 Chr3 20772375 20775091 -
Bisa Bisa05g2134 Chr05 47595770 47599831 -
Dere Dere05g1167 Chr05 18734635 18737552 +
Enph Enph7g0206 Chr7 7863729 7867832 -
Glsi Glsi10g1831 Chr10 12685181 12689388 +
Lapu Lapu6g02248 Chr6 22006168 22009079 +
Lapu Lapu6g02248 Chr6 22006168 22009079 +
Lasa Lasa2g01406 Chr2 453978280 453979375 -
Lele Lele26g1417 Chr26 9947600 9947968 +
Lele Lele28g1401 Chr28 10117860 10120021 +
Mepo Mepo7g02006 Chr7 30302561 30305465 -
Mesa Mesa17g03320 Chr17 58586057 58588976 -
Mibi Mibi08g0995 Chr08 23286067 23289223 -
Phac Phac8g03234 Chr8 40651644 40654089 +
Phco Phco3g00500 Chr3 3888495 3890414 -
Prci Prci2g2276 Chr2 17926585 17931392 +
Pste Pste8g01567 Chr8 8951970 8955192 +
Pumo Pumo9g02560 Chr9 60621774 60624974 +
Pvu Pvu8g2519 Chr8 55739438 55741857 +
Rops Rops9g01107 Chr9 18180181 18182897 +
Seca Seca6g02462 Chr6 87334520 87338652 +
Spst Spst8g00266 Chr8 2327306 2329570 -
Vian Vian7g01759 Chr7 27547408 27549190 +
Vifa Vifa1g01559 Chr1 257075016 257076147 -
Vimu Vimu1g01217 Chr1 9502419 9504191 +
Viun Viun8g02042 Chr8 31029333 31031616 -
Vivi Vivi7g01690 Chr7 74883724 74886708 -