Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05359 ATGGCTCCAAGATTGGATTTTTCAAGTTGGTGGGTGAAAGATACACAGAAAGGAACACCAGTGGTGGTGAAAATGGAGAACCCCAGTTTCTCAGTTGTGGAGATTAATGGTGCAGATGCTGCATTTAGACCAGTAGAGAAAAACCGTGGTAAGAATGCTAGACAAGTTACATGGGTTTTGCTTCTTAAAGCTCATCGTGCTGTTGGTTGTGTTGCTTGGTTAGCTACTGTTCTTTGGGATTTGCTTGGAGCTATTAAGAAAAGGTTGATTCATAGACAAGGTGTGGCTGCTGAAAAAGGGAAATTGTTGTTTAGAATTATTAGTTTGTTTTTAGTGATTTCTTTGGCTGTTTTGGCTTTTGAGGTTGTTGCTTATTTTCAAGGTTGGCATTTTGGGAATCCCAATTTGCACATTCCTCATACTTCTGATTTTGAAAGGTTGTTCCACATGGCTTATGTTGCTTGGTTGACGTTTCGTGCTGAGTACATTGCTCCACCAATTAAGGCTCTTTCAAAGTTTTGTATTGTTTTGTTTCTTATCCAATCCGTGGACCGTATGCTTCTTTGTTTTGGGTGCTTTTGGATCAAATTCAAGAAGGTTAAGCCAAGAATTAATGGAGACCCTTTCAAGGTTGATGATGTTGAACAATCTGTATGCAATTATCCAATGGTTTTGGTTCAAATTCCAATGTGCAACGAGAGAGAGGTGTATGAGCAATCTATTTCTGCAGTCTGCCAAATTGATTGGCCGAGAGATCGCTTACTGATTCAAGTACTTGACGATTCTGATGATGAGAGCATACAGTGGTTAATTAAGGCTGAGGTCTCTAAGTGGAACCAAAAGGGAATCAACATTATCTATCGGCATCGCCTGATCAGGACTGGATATAAAGCTGGAAATCTTAATTCTGCTATGAGCTGTGACTATGTGAAAGACTATGAATTTGTTGCAATATTTGATGCAGACTTTCAACCCAATCCTGATTTTCTTAAGCAAACTGTGCCACATTTCAAGGACAATCCCGAGCTAGGTTTGGTCCAAGCTAGATGGTCTTATGTGAACAAGGATGAGAATTTGTTGACTCGCCTTCAAAACATAAATTTATGCTTCCATTTTGAAGTAGAACAGCAAGTCAATGGAGTGTTTCTTAATTTTTTTGGTTTCAATGGAACTGCCGGTGTTTGGAGAATCAAAGCGCTAGAAGAGTCCGGGGGATGGCTGGAGAGGACAACTGTAGAAGATATGGACATTGCCGTCCGAGCTCATCTCAATGGTTGGAAATTTATCTTCCTAAATGATGTCAAGGTACTTTGTGAAGTTCCTGAGTCATATGAAGCTTATAGGAAGCAGCAACACCGCTGGCATTCAGGGCCTATGCAACTTTTTAGGCTGTGTCTTCCAGCAATTTTGAAATCTAAGGTGTCACCTTGGAAAAAAGCAAACTTAATTCTGCTATTTTTTCTCCTAAGGAAATTAATCCTTCCCTTTTACTCCTTCACTTTGTTTTGCATAATCCTTCCCTTAACAATGTTTGTTCCAGAGGCAGAACTTCCTTTATGGTTGATTTGCTATGTTCCTGTATTCATGTCAATCCTTAACATTCTTCCTGCACCAAAGTCTTTTCCTTTCATTGTTCCGTACCTCCTTTTTGAAAACACCATGTCTGTGACTAAATTCAATGCAATGGTATCCGGACTCTTCCAATTGGGAAGCTCTTATGAATGGATTGTCACAAAGAAAGCTGGAAGGTCATCAGAGTCTGATTTACTTGCTGCTGCAGAAAGAGAAACTAAGTCGATTGAACAACAAAAGATCCATAGAGGAGCTTCTGAGAGTGAACTTGTTGAGTTACAACAATTGAAGGAACAGAAAGCAGAAGCTACAACACCTGTTAAGAAAGCTAATAAGATATATAAGAAAGAACTAACTTTGGCATTCCTTCTTCTCACAGCTTCTGTCAGAAGTCTGTTATCTGCACAAGGAGTTCACTTCTACTTTCTGCTTTTTCAGGGAGTGACATTCCTCCTTGTAGGCCTTGATTTGATTGGAGAGCAGATGAGCTAG 2064 0.3978 MAPRLDFSSWWVKDTQKGTPVVVKMENPSFSVVEINGADAAFRPVEKNRGKNARQVTWVLLLKAHRAVGCVAWLATVLWDLLGAIKKRLIHRQGVAAEKGKLLFRIISLFLVISLAVLAFEVVAYFQGWHFGNPNLHIPHTSDFERLFHMAYVAWLTFRAEYIAPPIKALSKFCIVLFLIQSVDRMLLCFGCFWIKFKKVKPRINGDPFKVDDVEQSVCNYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDRLLIQVLDDSDDESIQWLIKAEVSKWNQKGINIIYRHRLIRTGYKAGNLNSAMSCDYVKDYEFVAIFDADFQPNPDFLKQTVPHFKDNPELGLVQARWSYVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAILKSKVSPWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPLWLICYVPVFMSILNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERETKSIEQQKIHRGASESELVELQQLKEQKAEATTPVKKANKIYKKELTLAFLLLTASVRSLLSAQGVHFYFLLFQGVTFLLVGLDLIGEQMS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05359 687 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 214 441 IPR029044 -
Trre5g05359 687 SUPERFAMILY Nucleotide-diphospho-sugar transferases 221 501 IPR029044 -
Trre5g05359 687 Pfam Glycosyl transferase family group 2 316 518 IPR001173 -
Trre5g05359 687 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 152 684 - -
Trre5g05359 687 FunFam probable xyloglucan glycosyltransferase 5 215 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05359 Trre-Chr5 54355341 54358475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05359 1 687 Miscellaneous Gene Families AT4G31590 79.480 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05359 - - gmx:100790397 1252.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05359 5 54355341 54358475 Trre5g05359 5 54355341 54358475 ECH