Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02502 ATGCGTCAATTCTACAGCGACTGCCACATTTATGGCACCGTTGATTTTATTTTCGGTAACGCCACCGTAGTCTTCCAAAATTGCAACATCTTCCCCCGCCTCCCTATGACTGGCCAATTCAATTCAATTACCACACAAGGCAGAACCGATCCCAACCAAAATACCGGAATCTCCATACACAACGCAACGATTCGACCCGCTGACGATTTGGCCCTTCGCGTTGGTGTTGTGAAAACGAAGGAGAGAAAAGTGTGCGTTGGGGTTGCTGCTGTTGTTGTTGCTTGTGATGTTGAGGTGGTTGTTGCTGCGAGTGGTAGTGGAGGGAGGGAGGGGGGCGTTGGGGAGGGAGAGGGGAGGAGGGTTGCGATGGGGAGGGAGAGGGAGGGGGAGTATGCGCTGGGGAGGGAGGGATTAGGGTTTGGGGGTGGTTTGCCAGGCGGAGGAGGAGGAGGAGGAGGAGGAATCTCATGGGATCTCAAATGGCTTCTGCAGTGGGTTCTCTCAGCGGTTGTCGTCGCCGTTGGATTGCACGCTCTCGTCAAGAACACCGCTTCACGATACTTTGAGGTTCACGCCAATTTCGATTCTGATCGGACTCATCCCATGCCTTCTTCTCCCTCCGCCGCCGCCGCCATTGCAATGGACCAACCTCTTTGCGCCGTCTGCTCCAAACACGCCTCCAGCAGGTGTTCCCGCTGCAAATCCGTCAGATACTGCTCCCAAGCGTGTCAACAGATGCACTGGAAATCCGATCATAAGTTGAAATGCAAGGAAGTTCATAGTACCATGAATTTGGCTCAATCTGGGCCAGCTAGTCCAGGGTTTAAAGCTTCTGCTGCTGTTAATAAAAGCACATCTTCAATTGCCCTAATACCTGCTTGTGGACGTGAAATTTCCAAGCCGATCAAGCAGCCTAAAAATCCTCTTTTTCCTTATGATGAATTTGTTAAATTCTTTAACTGGGATAAGCCTGGATTTCCTCCTTGTGGGCTCTTGAATTGTGGAAATAGCTGCTTTGCAAATGTGGTTCTCCAATGTCTCTCATTCACAAGGCCGCTTATCGCCTACCTGTTGAAAAACGGCCACCGCAGAGAATGCAGTCGTAATGATTGGTGCTTTCTGTGTGAATTTGAAATCCATGTTGAGAAAGCAAGGCAAAGTTCACAGGCATTTTCTCCAATGAACATTCTCTCTCGTTTGCCTAATATTGGTGGCACACTGGGTTATGGAAGACAAGAGGATGCTCATGAATTCATGAGGTTTGCAATCGACACTATGCAGTCTGTATGCCTTGATGAATATGGTGGAGAAAAAGCTGTCCCTCCTAACCTTCAAGAGACAACACTTATTCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGTTTTGCACAAAATGTGAGAAGCAGTCAAATCAATACGAAAACATGATGGACTTGACTGTTGAAATTAATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGATCAGTTCACTGCCAAGGAGTGGCTTCATGGTGAAAATATGTATAAATGTGATGGGTGCAAAGATTATGTCAAGGCTTGGAAACGTCTCACTGTGAAACGAGCTCCAAATATTCTTACTATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGCAAACTTAACAAGAGAGTAACGTTCCCTGAGACTCTAAATCTTAGCCCTTTCATGAGTGAAGTTGAAGATGGATCTGATATTTATAAGCTGTATGCTGTTGTAGTCCACATCGACATGCTGAATGCTTCCTTTTTTGGTCATTACATTTGCTACATTAAGGATTTCCATGGAGACTGGTATAGAATTGATGATTGGAAGGTAATGCAAGTGGAATTGGTGGAGGTACTTTCTCAAGGTGCATACATGTTGTTATACAGCAGGGTAACTGCTCGGCCATCAGGCCTTCAAACTACAGAATCTTCGGACACACACATGCAGACAGTTGAAGTGGAAGTGGAGCCCAGCCCAACTGAACAGGCCGAATGTCTCTCAAATATGGAGACTGTAACTTGCAATGGCACATGTGATGCTTTTCCAGCTGAACATAGTAGTAATTCAGAACTGAAGGTTTCTGCCTGTGAACAGTCTAAGGACATCCGCTTGATTGATGTTGCAAATGGGACTCCAAGTTGGGCAACCGAATCGTCTCATGTACCTTCTAAATCTGGCAAAGATTTGGAGGATATAGATATGAGGAGATCAAATCTCTGCTCATCTGTTGTGGAAGATATTTTATGCTGCACGGAAGAGCAAGACGATACTGATATGGCTAAGGTCAGTGTTTCTCCACGCTTGGCAAATGGATTTTCTTCCCTGAATGATTCTTCTGTTTCAATGGATTATCAAAACTCGGGGGAAGATCAAGAGCATGTAGAACTTGTCAAATGCAAGCCACTGACAGCACAAGGCCATGCAAATCATGGCAACGGGTATGCTAGTGCAAACAAATATGCTATTCCAGTTGAAGATGATGGCTCTGTGTTTTCTGGCGTTGGTTCTTTCTCCACTGAAACATCCGCATCAGAAATGCATCAATTGAAGCGGAGATTGCCATTTCACGGTTCTGAAACTGGCCACGCAAATGGAGTCAAGAAAGTGGAGGTATCTGGGGACAAGTTAACAACTGTGAAGGAAGCTTCCTACCATGGTTCCCCCTCTCTCCGTCCCCTTTGCTTTTCCCTTTCCCTTTCTCTTTCTCTTTTTGGATTTCCTTCTCCACAATTAATACACACGCTCCCATCTCCTCTTCTCTTCTGCAACCAACCACTCTTTCACTTTCACTCTCACTCACTCACTCCAAAGCACCACCAGTTTCCCCTTCTTTCTATTAGTTGTTTTGTCCAATTTCTTTTCTCATCGATGGAACATTCTAGAGATTGGAATGGTCAAGGTAGAAGTCTAAAGAGAAAATCACAAGAAAATGGAGATCATAAACTCCTCAATAACTTTTCTCTTGATGACCTCAATGAGGATCTGTTTGAAAGGATACTTTCATGGCTTCCAACTTCCACATTCTTTCGCCTTACTTCCGTGTCGAAACGGTGGAATTCGGTTGCTGATTCGGCTAGTTTCAAGCTTGCCTGCTCAAGCATTCCTTCCAGGGATCCTTGGTTCTTCATGGTTGCTCCCAACCTTAACCAATCTATAATCTTTGACTCTGCTGAAAGAACTTGGAAAAGACTCAATCACCCCCCACTTTTGCATCAAGATTCTAATAAAAGTTGTATGCCGGTTGCTGCCTCCGGTGGCTTGATTTGCTACCGTAATTCATCAGGAAGCTTCATTGTAAGCAACCCTGTGACAGGAACTTGTAGTGAACTCCCTCTGCTTGAGTTTTCCCCTCAAAATCAACCACTCAATGCAATTGTGATGAGCACAACCACCAAAGACCAACAACTATACTACAAAATTGTGTTAGTCTTCGGAGAACTTCAGAATCTTGTGTTTAGAGTCTACAATTCTTTCTCTGGAAGTTGGGAAGGTGAGACTTCTCTAAGGAGAAAAGTTGATGATTGTTCTATGGAGTTTGATTCGACCGAGGACGACAATGTTGTATACTTCCTTAGTAAGGCTGGTATTGTGGTAGCAAGCAACATGCAGAGAAGCCCTTCAAAGCAATATTCGTCGGTCATTACCGACAAAAATGGCGAAGAGGTTGTCTATTTTCTTAGCTCCACAGGGACAATAGTAGCTTGCAACCTGACAAGCAAGTGCTACATCGAGTATCCAAGGTTGTTGCCTGTTCTGAGTGAGTATTCAATTGATGTTGTGGAGTGTAATGGGGAGATGCTAGTTGTTCTGTTATCAGAGTTCTTGGAAACCGCGAGTCTTCGTGTGTGGAAGTATGATGAAGCTAAAAGAGGGTGGCACCAGATTGCAGCAATGCCTGCATCAATTTCTCATGAATGGTATGGAAAGAAAGTGGATATTAACTGTGTAGGAGCTGGTAACCAGATATTCATATGCTTGAACTCCTCTGAGCTATGTACTTATGTTCTGTGTGATTTGGTTAGCAACAACTGGGTTGAATTGCCAAATTGTTGCATAAATGGTGAAGTCATAGACTTTATGTCTTCATTTTCATTTGAGCCTAGGATAGAGGCTTCTGTATGA 4134 0.4458 MRQFYSDCHIYGTVDFIFGNATVVFQNCNIFPRLPMTGQFNSITTQGRTDPNQNTGISIHNATIRPADDLALRVGVVKTKERKVCVGVAAVVVACDVEVVVAASGSGGREGGVGEGEGRRVAMGREREGEYALGREGLGFGGGLPGGGGGGGGGISWDLKWLLQWVLSAVVVAVGLHALVKNTASRYFEVHANFDSDRTHPMPSSPSAAAAIAMDQPLCAVCSKHASSRCSRCKSVRYCSQACQQMHWKSDHKLKCKEVHSTMNLAQSGPASPGFKASAAVNKSTSSIALIPACGREISKPIKQPKNPLFPYDEFVKFFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLKNGHRRECSRNDWCFLCEFEIHVEKARQSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFAIDTMQSVCLDEYGGEKAVPPNLQETTLIQHIFGGHLQSEVFCTKCEKQSNQYENMMDLTVEINGDAASLEECLDQFTAKEWLHGENMYKCDGCKDYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLNLSPFMSEVEDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFHGDWYRIDDWKVMQVELVEVLSQGAYMLLYSRVTARPSGLQTTESSDTHMQTVEVEVEPSPTEQAECLSNMETVTCNGTCDAFPAEHSSNSELKVSACEQSKDIRLIDVANGTPSWATESSHVPSKSGKDLEDIDMRRSNLCSSVVEDILCCTEEQDDTDMAKVSVSPRLANGFSSLNDSSVSMDYQNSGEDQEHVELVKCKPLTAQGHANHGNGYASANKYAIPVEDDGSVFSGVGSFSTETSASEMHQLKRRLPFHGSETGHANGVKKVEVSGDKLTTVKEASYHGSPSLRPLCFSLSLSLSLFGFPSPQLIHTLPSPLLFCNQPLFHFHSHSLTPKHHQFPLLSISCFVQFLFSSMEHSRDWNGQGRSLKRKSQENGDHKLLNNFSLDDLNEDLFERILSWLPTSTFFRLTSVSKRWNSVADSASFKLACSSIPSRDPWFFMVAPNLNQSIIFDSAERTWKRLNHPPLLHQDSNKSCMPVAASGGLICYRNSSGSFIVSNPVTGTCSELPLLEFSPQNQPLNAIVMSTTTKDQQLYYKIVLVFGELQNLVFRVYNSFSGSWEGETSLRRKVDDCSMEFDSTEDDNVVYFLSKAGIVVASNMQRSPSKQYSSVITDKNGEEVVYFLSSTGTIVACNLTSKCYIEYPRLLPVLSEYSIDVVECNGEMLVVLLSEFLETASLRVWKYDEAKRGWHQIAAMPASISHEWYGKKVDINCVGAGNQIFICLNSSELCTYVLCDLVSNNWVELPNCCINGEVIDFMSSFSFEPRIEASV 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02502 1377 ProSitePatterns Pectinesterase signature 2. 10 19 IPR033131 -
Aip10g02502 1377 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 168 810 - -
Aip10g02502 1377 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 330 345 IPR018200 GO:0004843|GO:0006511
Aip10g02502 1377 ProSiteProfiles Zinc finger MYND-type profile. 219 256 IPR002893 -
Aip10g02502 1377 Gene3D - 1 86 IPR012334 -
Aip10g02502 1377 SUPERFAMILY Cysteine proteinases 325 655 IPR038765 -
Aip10g02502 1377 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 329 635 IPR028889 -
Aip10g02502 1377 ProSitePatterns Zinc finger MYND-type signature. 219 256 IPR002893 -
Aip10g02502 1377 Gene3D - 986 1032 - -
Aip10g02502 1377 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 168 810 - -
Aip10g02502 1377 SUPERFAMILY Pectin lyase-like 2 70 IPR011050 -
Aip10g02502 1377 CDD Peptidase_C19E 328 633 - -
Aip10g02502 1377 Pfam MYND finger 219 256 IPR002893 -
Aip10g02502 1377 Gene3D Cysteine proteinases 325 644 - -
Aip10g02502 1377 SMART fbox_2 995 1035 IPR001810 GO:0005515
Aip10g02502 1377 ProSiteProfiles F-box domain profile. 989 1034 IPR001810 GO:0005515
Aip10g02502 1377 Pfam Pectinesterase 1 73 IPR000070 GO:0030599|GO:0042545
Aip10g02502 1377 SUPERFAMILY F-box domain 986 1049 IPR036047 GO:0005515
Aip10g02502 1377 Pfam Ubiquitin carboxyl-terminal hydrolase 329 632 IPR001394 GO:0004843|GO:0016579
Aip10g02502 1377 Pfam F-box domain 992 1031 IPR001810 GO:0005515
Aip10g02502 1377 SUPERFAMILY HIT/MYND zinc finger-like 215 261 - -
Aip10g02502 1377 Gene3D - 206 262 - -
Aip10g02502 1377 SUPERFAMILY Galactose oxidase, central domain 1055 1305 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02502 Aip-Chr10 111328167 111339940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02502 154 658 Miscellaneous Gene Families AT4G31670 61.057 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02502 K11855 - gmx:100810577 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02502 10 111328167 111339940 Aip10g02502 10 111328167 111339940 ECH