Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0771 ATGCATGTATCCGGATTCTCTTTGGATCTCAATTGGTTTCTGCAATTCATATTCACATCCTTCGTCGTCGCTTTAGGACTGCTCCATTTGGTGAAGAACACGGCGTCGAAGTACTTCGTCGTCGACGCCAATTTCGAAGGAGGAGGAGGAGGTGGAGGAGGAGAAGGAGGAGGTGCTGGGGCTGGTGACGTCTCGGTGCCCGGCGGTGGCCGGAGTGATTCCAGCATCATGCCCGGCGTCTCCGGAACCGGCGATTCCTGCCTCGTGTGCGGAAATTTGGGCACCAAGAAGTGTTCTGGGTGCAAGGCCGTTCGGTATTGCTCACAAACATGCCAAGCCACTCACTGGAAATCTGGGCACAAGACGAAATGCAAGGATTTTCAGTTATCAGGCAAGGCAAATTTGGCTGACTCCACTACTCACTCTGGAAGAAAAGCTTCTGGTGTTGGGGTTAATAATTCTAATGGAATTGCCCTTGTTCCTAGTAGTGGAACCTCTAAGATTCTTAAACAGTCGAAAGAGATTCTTTTCCCCTATGATGAGTTTGTTGAATTTTTCAACTGGGACAAGCCTGGATTCCCTCCTTGTGGGCTTATAAATTGTGGAAACAGTTGCTTTGCCAATGTAGTTCTGCAATGTCTTGCATACACTCGGCCACTTGTTGCCTACTTGTTGGAGAAAGGCCACCGGAGACAGTGTAGACGGAATGATTGGTGTTTTCTTTGTGAATTTCAAGTCCATGTTGAAAGAGCAAGCCACAGTCCTCAACCCTTTTCACCAATCAATATCCTATCTAGGTTACCTTCTATTGGTGGTAATCTAGGCTATGGAAAACAAGAGGATGCTCATGAGTTTATGAGGTTTGCTATCGATACAATGCAATCAGTTTGCCTTGATGAATTTGGAGGTGAAAAATCGGTTCATCCAAGCTCTCAAGAAACGACCCTCATTCAACACATATTTGGTGGCCACCTCCAATCTCAGGTCATATGTACAAAATGCAGTAAGATATCAAATCAGTATGAGAATATGATGGATTTAACTGTTGAAATTCACGGTGATGCTGCATCTTTGGAGGAATGCCTAGACCAATTCACTGTCACAGAGTGGCTTCATGGAGAAAATATGTACAAATGTGACGGATGTAATGACTATGTGAAGGCATCCAAGCGTCTTACTGTTCGACATGCTCCAAATATTCTTACTATTGCTTTAAAAAGATTTCAGAGTGGGAGGTTTGGGAAACTTAACAAGAGAGTCACTTTCCCTGAGACTTTAGATCTTAGCCCTTACATGAGCAAGGCAGTTGTTGGTACAGATGTTTACAAGCTATATGCAGTTGTTGTGCATTTGGACATGCTAAATGCATCATTTTTTGGCCATTATGTTTGCTACACCAAGGATTTTGGTGGAAACTGGTACAGGATTGATGACTGTAAGGTTACAAGGGTTGAATTGGACGATGTGCTCTCGCAGGGGGCTTATATGCTCTTATATAGCAGGGTTTGTGTTCGATCATCATGTTTGAAGACCACGGAACCTTTTAAAAAAGAGAATGAGCAAATGGTGGAAGTGGCCCAAGAAGTGGAGCCTTGCTCAAAACAACCAGTTGAATGCTTCACTAAAGCAGAAAAGAGTAATCATGTTGAGAGTTCCAGGTTCCTGCCTTCTGAGAGTAATGCATGTTCAAAGGTTTCTAACTGTGAAGAGTTGTCTTTCAGAACTAACTATGAAATTGTAAGAAAAGATTCAGAGGACGTGGATATGATTAATCCTGAGTTATGCTCACCAGTTTCAAGGGATAATGAAGTTGTCGACAATGGACATTCTAATCCTGAAGAAATTGCTGTGCTTGTTGACCATACCCCTAGAATGGTTTCAGGTTTTGCTTCTACAAGTGAGATTTCTTCAACTGAAGTTCATTATCCAAAATGCAAATCAGTCTCTAGTTCTGATGTTGAAGAGGGTGGCAGAGCCAAGAGCACTTGTGTGGATGAGGTTATGTCATTGGCATCTTCAACCGAGAACTCTGTCCCCACTCAAAATGGGGCCTGTGGAAGGGCTGAAACGTCTCATGAAGTTTCTGCTGCTCCTAGAAGCACAGTTAAAGGAACCCTGGATGAAACAAAACCTGTTAGTTCTGAAGGTTTGGCAATTTCCTTTGTGGACAATCTGGAAAGGAATAAATGGGGAAAGGATGTACCATCTTCTAGCTGTTGTACTGATCATGGTGGGGGAAAATTGACAGGGCAGAACTCTTCCTCTGACACAAAGCTAAAGCCTTTATTTTCTCCTGGTTTTCTTGGGAAGCGACCCCGGAATAAATCCACGAAGAGAGATGGGAAAGCCTCAGAAGAATGCCATGAAGTTGCTACTGCCGGCAAGGTGAGCAGCAACTGTAATGGAATTGCCAAACCTGGTTTTCCTCATCAAAGGAGTGGTGAGTTAAACAATGAGGCACAAGCTCTTTCAAACTACAATAATTTACCCTCTTCTAGTTTTGTTGGGGAACAACCCCAGAAGAGTCTGAATGAGGATGAGATGGTCAGCATTGAATTTAGTGAGTCAGTTATTCCTTGTGAGGAAGATGGTAATTTTGTTACTGCCAATGAGAGCTCTAATAACATTACTATGGGGGGTGCAGAAGAAAGCAAGGGACGAAACAAAGATTGCTCCATTAATAGTGGCTCTATCTGTTCCCTTGATAATGCATTAGCTGAGAAATTATTGGCTATTGATGGGGAAGTTCATGAAGGGGGTGCAATCACTCATTCTGGAGTAATGGGAACAAAGTCCAAAGATCTGGCTGAACGAGGGCTGTAA 2823 0.4354 MHVSGFSLDLNWFLQFIFTSFVVALGLLHLVKNTASKYFVVDANFEGGGGGGGGEGGGAGAGDVSVPGGGRSDSSIMPGVSGTGDSCLVCGNLGTKKCSGCKAVRYCSQTCQATHWKSGHKTKCKDFQLSGKANLADSTTHSGRKASGVGVNNSNGIALVPSSGTSKILKQSKEILFPYDEFVEFFNWDKPGFPPCGLINCGNSCFANVVLQCLAYTRPLVAYLLEKGHRRQCRRNDWCFLCEFQVHVERASHSPQPFSPINILSRLPSIGGNLGYGKQEDAHEFMRFAIDTMQSVCLDEFGGEKSVHPSSQETTLIQHIFGGHLQSQVICTKCSKISNQYENMMDLTVEIHGDAASLEECLDQFTVTEWLHGENMYKCDGCNDYVKASKRLTVRHAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSKAVVGTDVYKLYAVVVHLDMLNASFFGHYVCYTKDFGGNWYRIDDCKVTRVELDDVLSQGAYMLLYSRVCVRSSCLKTTEPFKKENEQMVEVAQEVEPCSKQPVECFTKAEKSNHVESSRFLPSESNACSKVSNCEELSFRTNYEIVRKDSEDVDMINPELCSPVSRDNEVVDNGHSNPEEIAVLVDHTPRMVSGFASTSEISSTEVHYPKCKSVSSSDVEEGGRAKSTCVDEVMSLASSTENSVPTQNGACGRAETSHEVSAAPRSTVKGTLDETKPVSSEGLAISFVDNLERNKWGKDVPSSSCCTDHGGGKLTGQNSSSDTKLKPLFSPGFLGKRPRNKSTKRDGKASEECHEVATAGKVSSNCNGIAKPGFPHQRSGELNNEAQALSNYNNLPSSSFVGEQPQKSLNEDEMVSIEFSESVIPCEEDGNFVTANESSNNITMGGAEESKGRNKDCSINSGSICSLDNALAEKLLAIDGEVHEGGAITHSGVMGTKSKDLAERGL* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0771 940 MobiDBLite consensus disorder prediction 672 710 - -
Vvi4g0771 940 FunFam Ubiquitin carboxyl-terminal hydrolase 15 190 510 - -
Vvi4g0771 940 SUPERFAMILY HIT/MYND zinc finger-like 85 126 - -
Vvi4g0771 940 Pfam MYND finger 87 124 IPR002893 -
Vvi4g0771 940 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 196 502 IPR028889 -
Vvi4g0771 940 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 197 212 IPR018200 GO:0004843|GO:0006511
Vvi4g0771 940 MobiDBLite consensus disorder prediction 52 77 - -
Vvi4g0771 940 FunFam Ubiquitin carboxyl-terminal hydrolase 15 80 128 - -
Vvi4g0771 940 Pfam Ubiquitin carboxyl-terminal hydrolase 196 499 IPR001394 GO:0004843|GO:0016579
Vvi4g0771 940 Gene3D Cysteine proteinases 192 511 - -
Vvi4g0771 940 CDD Peptidase_C19E 195 500 - -
Vvi4g0771 940 MobiDBLite consensus disorder prediction 742 760 - -
Vvi4g0771 940 ProSitePatterns Zinc finger MYND-type signature. 87 124 IPR002893 -
Vvi4g0771 940 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 85 502 - -
Vvi4g0771 940 MobiDBLite consensus disorder prediction 734 786 - -
Vvi4g0771 940 ProSiteProfiles Zinc finger MYND-type profile. 87 124 IPR002893 -
Vvi4g0771 940 Gene3D - 80 129 - -
Vvi4g0771 940 MobiDBLite consensus disorder prediction 672 698 - -
Vvi4g0771 940 SUPERFAMILY Cysteine proteinases 192 508 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0771 Vvi-Chr4 8831638 8849653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0771 1 538 Miscellaneous Gene Families AT4G31670 61.183 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0771 K11855 - vvi:100246913 1887.46