Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1900 ATGCAATCTGTTTGCCTTGATGAATTTGGCGGAGAAAAAGCTGTCCCTCCAAAGCTTCAGGAGACAACCCTTATTCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTTGTTTGCACAAAATGTGAGAAGAATTCAAATCAGCATGAAAACATGATGGACTTGACAGTTGAAATTCATGGAGAAGCTGCTTCCTTGGAGGAATGTCTAGATCAGTTTACTGCTAGGGAGTGGCTTCATGGGGAAAATATGTATAAATGTGATGGGTGCAAGGAATATGTTAAGGCATGCAAACGTCTCACTGTGAAACGAGCTCCAAATATTCTTACAATTGCCTTAAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAACTTTCCCTGAGACTTTAGATCTTAGCCCTTTCATGAGTGAAGTTGGAGATGGATCTGATATCTATAAGCTATATGCTGTTGTAGTCCATATTGACATGCTGAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCTACGGAGAATGGTATAGGATTGATGATTGGAAGGTAATGCGAGTGGAATTGGAGGAAGTACTTTCCCAGGGTGCTTACATGTTATTGTATAGCAGGGTTAATGCCCGGCCATCAGCCCTTCAAACTATTGAATCTTCAGAGACGGATGTTCGAACAGTGGACGTGGATGTGGAGCCTGGTCCAACTGAACAAGCTGAATGCCTCTCAATTATGGAGACTGTAACCTGCAATGGAGGAGGTGATTTTTTTCCATCTGTTAGTAGTCCAGAACTGAAGTTTTCTGGCTGTGAAAACAAGTCTTTGGCTGGGATGAAATCTGGTGCAGAAAGGATGCATGCTAACGATATTGACTTTATTGATGTTGCAAATGACACTTCCTGTCGTGCCACTGAAGCATCTTATATATCTTCATCTCAGTCTGTCAAAGATTTGGAGGATATAGATATGAGCAGTTCAAATCCATGTTCATCTGTTTCAGGCTGCGCAGAAGAGCAAGATGATGCTGATATGGCTAAGTCGGGTCCTTCTCTAGGTTTGCCAAATGGATTCTCTTGCCTCAATGATTCTTCGGTTTCAGTAGATTATCAAAACACGAGGGAAGACTCCGAGCATGTAGATGTGGTTAAATGCAAGCCATTGGCAGCTCAAGGACATGCAAATTATAGCAATGGGTATGCTTGTGCAAACAAATATGCTAATCCAGTTGAAGATGGTGGTTGTGTGTTTTCTGGCGTTGGTTCTTTTTCCACTGAAACATCAGCAGCTGAGATGCATCAATTGAAGCGGAGATTGCCATTTTACAGTTCTGAATCTGACCAAGAGAATGGAGTTAAGAAAGTTGAAATATCAGGGGACAAGTTAATAATGTAG 1401 0.4133 MQSVCLDEFGGEKAVPPKLQETTLIQHIFGGHLQSEVVCTKCEKNSNQHENMMDLTVEIHGEAASLEECLDQFTAREWLHGENMYKCDGCKEYVKACKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPFMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFYGEWYRIDDWKVMRVELEEVLSQGAYMLLYSRVNARPSALQTIESSETDVRTVDVDVEPGPTEQAECLSIMETVTCNGGGDFFPSVSSPELKFSGCENKSLAGMKSGAERMHANDIDFIDVANDTSCRATEASYISSSQSVKDLEDIDMSSSNPCSSVSGCAEEQDDADMAKSGPSLGLPNGFSCLNDSSVSVDYQNTREDSEHVDVVKCKPLAAQGHANYSNGYACANKYANPVEDGGCVFSGVGSFSTETSAAEMHQLKRRLPFYSSESDQENGVKKVEISGDKLIM* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1900 466 Pfam Ubiquitin carboxyl-terminal hydrolase 20 207 IPR001394 GO:0004843|GO:0016579
Dod09g1900 466 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 210 IPR028889 -
Dod09g1900 466 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 365 - -
Dod09g1900 466 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1 365 - -
Dod09g1900 466 SUPERFAMILY Cysteine proteinases 19 226 IPR038765 -
Dod09g1900 466 Gene3D Cysteine proteinases 8 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1900 Dod-Chr9 40561458 40566049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1900 1 224 Miscellaneous Gene Families AT2G24640 75.446 1.04e-125 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1900 K11855 - gmx:100810577 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1900 09 40561458 40566049 Dod09g1900 09 40561458 40566049 ECH