Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0014 . . . . . Adu06g02682 . . . . . . . . . . . . . . . . . . . . . . Car05g03126 . . . . . . . . . . . . . Gma04g00787 Gma06g00782 . . . . . . . . . . . . . . . . . . . Lasa6g00791 . . . . . . . . . . Mal2g0645 . . . . . . . Mtr3g4113 . . . . Phco2g00876 . . . . . Pste8g02114 . . . . . . . Pvu1g0793 . . . . . Spst8g01789 . . . . Tpr7g0383 . . . Tsu07g00419 . . . . . . . . . . . . .
Vvi4g0015 . . . . Adu08g00864 Adu06g02680 . . . . . . . . . . . . Apr5g1079 Apr9g0028 Arst8g01162 Arst6g03451 . . . . . . . Car04g03023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu9g01714 . Lasa5g04337 Lasa5g04334 . . . . . . . . . . . . Mepo3g07654 . Mesa9g05348 . . . . Mtr1g0020 . . Phco7g00964 Phco2g00867 . . . . . . Pte3g01009 . . . . . Pvu9g1151 Pvu1g0789 . . . . Spst9g00994 Spst8g01790 . . . . . . . . . . . . . . Vimu10g02696 . . . . . . .
Vvi4g0016 . . . . . Adu06g02676 . . . . . . . . . . . . . . . Arst6g03450 . . . . . Bva06g02572 Car05g03127 . . . . . . . . . . . . . . Gma06g00783 . . . . . . . . . . . . . . . . . . . Lasa5g04335 . . . . . . . . Lja1g3676 . . Mal1g5266 . . . . . . . Mtr1g0026 . . . . . . . . . . . . . . . . . Pvu1g0788 . . . . . Spst8g01791 . . . . . Tpr1g3198 . . . . . . . . . . . . . . . .
Vvi4g0017 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0018 . . . . . . Aed10g0064 . . . . . . . . . . . Apr5g1078 Apr9g0027 . . . . . . . Bva06g02573 . . Cca03g01381 . . . . . . . . . . . . . . . . . . . Lal17g0332 . . . . . . . . . . . . . . . . . . . . . Lja1g3675 . Mal2g0644 . . . . . . . Mtr3g4114 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g3253 . . Sto9g3155 Tpr7g0382 . . . Tsu07g00418 . . . . . . . . . . . Vra5g1003 .
Vvi4g0019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g03128 . . . . . . . . . . . . . Gma04g00788 Gma06g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal2g0642 . . . . . . . Mtr3g4116 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g0381 . . . Tsu07g00417 . . . . . . . . . . . . .
Vvi4g0021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0022 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 414 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0014 Chr4 172218 174712 +
Adu Adu06g02682 Chr06 103035941 103039976 -
Car Car05g03126 Chr05 76049307 76054688 +
Gma Gma04g00787 Chr04 7482335 7488191 +
Gma Gma06g00782 Chr06 7085105 7089202 +
Lasa Lasa6g00791 Chr6 28828629 28831062 -
Mal Mal2g0645 Chr2 7607962 7617094 -
Mtr Mtr3g4113 Chr3 54918547 54923061 +
Phco Phco2g00876 Chr2 10503482 10508383 +
Pste Pste8g02114 Chr8 18340371 18382274 +
Pvu Pvu1g0793 Chr1 11229476 11234860 +
Spst Spst8g01789 Chr8 21541437 21546716 -
Tpr Tpr7g0383 Chr7 3185059 3190453 -
Tsu Tsu07g00419 Chr07 3224370 3231888 -
Vvi Vvi4g0015 Chr4 176405 181717 +
Adu Adu08g00864 Chr08 16100865 16109557 -
Adu Adu06g02680 Chr06 103000681 103007259 -
Apr Apr5g1079 Chr5 15443152 15449728 -
Apr Apr9g0028 Chr9 378125 383612 -
Arst Arst8g01162 Chr8 16069321 16078240 -
Arst Arst6g03451 Chr6 102230980 102234836 -
Car Car04g03023 Chr04 58113769 58116822 +
Lapu Lapu9g01714 Chr9 31961728 31979407 -
Lasa Lasa5g04337 Chr5 653062194 653070721 +
Lasa Lasa5g04334 Chr5 652255980 652257992 +
Mepo Mepo3g07654 Chr3 89828957 89840077 +
Mesa Mesa9g05348 Chr9 88394749 88399605 +
Mtr Mtr1g0020 Chr1 256834 260646 -
Phco Phco7g00964 Chr7 7838777 7844239 +
Phco Phco2g00867 Chr2 10312379 10329617 -
Pte Pte3g01009 Chr3 8611271 8614033 -
Pvu Pvu9g1151 Chr9 16799262 16804567 +
Pvu Pvu1g0789 Chr1 11051477 11059106 -
Spst Spst9g00994 Chr9 8862866 8873006 +
Spst Spst8g01790 Chr8 21550391 21552921 -
Vimu Vimu10g02696 Chr10 38380782 38381090 -
Vvi Vvi4g0016 Chr4 183115 183936 +
Adu Adu06g02676 Chr06 102954757 102962566 +
Arst Arst6g03450 Chr6 102230980 102234836 -
Bva Bva06g02572 Chr06 16256754 16260106 +
Car Car05g03127 Chr05 76063630 76071843 +
Gma Gma06g00783 Chr06 7094255 7101533 +
Lasa Lasa5g04335 Chr5 652637996 652641981 +
Lja Lja1g3676 Chr1 45878302 45883349 -
Mal Mal1g5266 Chr1 125816331 125820051 +
Mtr Mtr1g0026 Chr1 291829 294837 +
Pvu Pvu1g0788 Chr1 11043969 11046251 -
Spst Spst8g01791 Chr8 21574472 21580641 -
Tpr Tpr1g3198 Chr1 36430690 36434840 +
Vvi Vvi4g0017 Chr4 185878 188582 -
Vvi Vvi4g0018 Chr4 191987 194565 +
Aed Aed10g0064 Chr10 443273 453254 +
Apr Apr5g1078 Chr5 15436759 15440500 -
Apr Apr9g0027 Chr9 366251 373067 -
Bva Bva06g02573 Chr06 16260906 16263765 +
Cca Cca03g01381 Chr03 32022900 32029175 -
Lal Lal17g0332 Chr17 2108828 2112885 +
Lja Lja1g3675 Chr1 45865038 45871218 -
Mal Mal2g0644 Chr2 7591421 7604054 -
Mtr Mtr3g4114 Chr3 54926269 54935865 +
Ssu Ssu1g3253 Chr1 84708203 84740618 -
Sto Sto9g3155 Chr9 32108293 32109912 -
Tpr Tpr7g0382 Chr7 3176953 3182497 -
Tsu Tsu07g00418 Chr07 3215375 3220590 -
Vra Vra5g1003 Chr5 16454458 16457568 -
Vvi Vvi4g0019 Chr4 203083 205748 +
Car Car05g03128 Chr05 76073746 76077736 +
Gma Gma04g00788 Chr04 7501433 7504554 +
Gma Gma06g00784 Chr06 7107498 7110649 +
Vvi Vvi4g0020 Chr4 212861 224640 +
Mal Mal2g0642 Chr2 7574959 7578142 -
Mtr Mtr3g4116 Chr3 54943218 54946892 +
Tpr Tpr7g0381 Chr7 3169481 3173299 -
Tsu Tsu07g00417 Chr07 3210116 3213305 -
Vvi Vvi4g0021 Chr4 227664 239766 +
Vvi Vvi4g0022 Chr4 240897 241284 +
Vvi Vvi4g0023 Chr4 241463 242123 +