Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3253 ATGGAAGTTGAAGCTGGTAAGAGTGTTGTTTCTAGGAGAGACCCGAGTGCGGAACTGGATGATGATGGCAGAACCAAAAGAACCGGGAACGTGATGACGGCTACCACGCACATAGTAACGGTGGTGGTGGGGGCAGGAGTGTTGGCTCTGGCTTGGGCCATGGCCCAGCTAGGATGGATAGCTGGCATAACCATTATGATCCTCTTTGCATGCATTTCCATTTACACTTACAATTTTATAGCTGATTGCTACAGATATCCTGACCCAGTCAATGGCAAGAGGAACTACACTTACATGCAGGCCGTCGATGCATACCTTGGTGGAACAATGTACGTGTTTTGCGGATTGGTTCAATATGGGAAGCTCGCTGGGATTACAGTGGGCTACACTATAACTACGTCTACAAGCTTGGTTGCTATAAGGAAGGCCATTTGCTTCCACGAAAGAGGTCACGGAGCTTATTGCAAGTTTTCAAATAATCCCTTTATGATAGGCTTCGGGATGTTGCAAATTATATTGTCTCAAATCCCAAATTTCCACAAGTTAACATATCTTTCCACCTTTGCTGCCATTACCTCTTTTGGTTATGCATTGATTGGAAGTGGGCTTTCTCTGGCAGTGGTGGTCTCAGGTAAAGGAGAAGCAACCCGTATATTTGGAAACAAAGTAGGGCAAGGACTATCTGAAGGAGATAAAATTTGGAGGGTTTTCAGTGCGTTGGGAAACATTGCACTTGCTTGCTCTTATGCTACTGTTGTTTATGATATAAtgGACACGTTGAAGTCATATCCCCCAGAATGCAAACAGATGAAAAAGGCCAATGTCTTGGGAATCACAGCAATGATGATACTTTTCCTGCTATGCGGTGGGCTTGGCTATGCTGCTTTCGGAGATGACACACCGGGGAACATCCTCACCGGCTTTGGATTTTACGAGCCCTTCTGGTTGGTCGCCCTTGGGAATGTTTTCATTGTAATCCACATGATGGGAGCATATCAGGTGATGGCTCAACCACTATTTCGTGTAGTTGAGATGGGTGCTAACATGGCGTGGCCGCGTTCAGATTTCATAAACAAGGAATACCCAATGAAAATGGGCTCCTTAACATTTAACATCAGCTTGTTTAGGCTAATTTGGAGGACAATATATGTGATAGTGGCCACAGTTATTGCCATGGCCATGCCATTTTTCAATGAGTTTCTTGCCTTGCTTGGAGCAATTGGGTTTTGGCCGCTTATTGTCTTCTTCCCTGTTCAAATGCACATTGCACAGagacaaataaaaagactaTCATTGAAGTGGTGTGTGCTCCAAATATTGAGCTTCGCGTGCTTCCTAGTTACAGTTACCGCAGCAGTTGGTTCCGTTCGTGGAATTAGcaagaatatcaaaaaatacaaactcTTCATGTATAAACAATAG 1422 0.4346 MEVEAGKSVVSRRDPSAELDDDGRTKRTGNVMTATTHIVTVVVGAGVLALAWAMAQLGWIAGITIMILFACISIYTYNFIADCYRYPDPVNGKRNYTYMQAVDAYLGGTMYVFCGLVQYGKLAGITVGYTITTSTSLVAIRKAICFHERGHGAYCKFSNNPFMIGFGMLQIILSQIPNFHKLTYLSTFAAITSFGYALIGSGLSLAVVVSGKGEATRIFGNKVGQGLSEGDKIWRVFSALGNIALACSYATVVYDIMDTLKSYPPECKQMKKANVLGITAMMILFLLCGGLGYAAFGDDTPGNILTGFGFYEPFWLVALGNVFIVIHMMGAYQVMAQPLFRVVEMGANMAWPRSDFINKEYPMKMGSLTFNISLFRLIWRTIYVIVATVIAMAMPFFNEFLALLGAIGFWPLIVFFPVQMHIAQRQIKRLSLKWCVLQILSFACFLVTVTAAVGSVRGISKNIKKYKLFMYKQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3253 473 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g3253 473 Pfam Transmembrane amino acid transporter protein 28 458 IPR013057 -
Ssu1g3253 473 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g3253 473 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 2 468 - -
Ssu1g3253 473 PANTHER OS05G0424000 PROTEIN-RELATED 2 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3253 Ssu-Chr1 84708203 84740618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3253 14 469 Organic Solute Cotransporters AT1G58360 53.611 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3253 K24917 - gmx:100780988 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3253 1 84708203 84740618 Ssu1g3253 1 84708203 84740618 ECH