Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1003 ATGGAAGTTGAAGCTGGTAAGAGTGTTAGTAGGAGTGCAGAAGTGGATGATGATGGCAAAATCAAAAGAACTGGTAACGTGTTCACCACAACGACGCACATAATAACGGTGGTGGTAGGAGCAGGAGTGCTGGCTCTGGCATGGGCCATGGCTCAATTAGGATGGATACCCGGCACAATCACCATGATCTTATTTGCATGCATTTCCGTTTACACTTACAATCTGATAGCTGATTGTTACAGATATCCTGATCCAATCAATGGCAAGAGGAACTACACTTACATGCAGGCAGTCCATGCATATCTTGGTGGAACAATGCATGTGCTTTGTGGATTGATTCAGTATGGGAAGCTTGCTGGGCTTACTGTTGGCTACACTATAACTTCGTCTACTAGTTTAGTGGCTATAAAAAAGGCTATTTGCTTTCACAGAAGAGGTCACCAAGCTTATTGCAAGTTTTCTAATAATCCCTATATGATTGGTTTCGGGATGTTGCAAATTTTGTTGTCTCAAATCCCAAATTTCCACAAGCTAACATATCTTTCAACCGCTGCTGCAATTGCCTCTTTTGGTTATGCATTCATTGGAAGTGGGCTTTCTCTGGCAGTCGTGGTCTCAGGTAAAGGAGAACCAAGCCGTATATTTGGAAACAAAGTAGGGCCAGCACTATCAGAAGCAGATAAAATTTGGAGGGTTTTCAGTGCTTTGGGAAATATTGCACTTGCTTGCTCGTATGCAACTGTTGTGTATGATATAATGGACACTTTGAAGTCATATCCTCCCGAATGCAAACAGATGAAAAAGGCCAATGTGTTAGGAATCACCATAATGACACTACTTTTTCTGCTATGTGGTGGCCTTGGCTATGCTGCTTTTGGGGATCACACTCCTGGAAACATCCTCACTGGCTTTGGATTTTACGAGCCATTCTGGTTGGTTGCTCTTGGCAATGTGTTCATTGTAACCCACATGGTGGGAGCATATCAGGTGCTTGCTCAACCACTGTTCCGTATAATTGAGATGGGTGCTAACTTGGTGTGGCCACGTTCAGATTTCATAAACAAAGAATACCCAACAAAAATAGGCTCCTTGACATTCAGTTTCAACCTTTTTAGGCTAATTTGGAGGACAATATTCGTGGCAGTGGCAACAACTATAGCCATGGCCATGCCGTTTTTCAACGAGTTTCTAGCTCTTCTTGGAGCAATTGGGTTTTGGCCTCTCATCGTGTTTTTCCCCATACAGATGCACATTGCACAGAAACAGATCAAAACATTATCATTGAAATGGTGTGTGCTCCAGCTATTGAGCTTTGTGTGCTTCCTTGTTTCAGTAGTCGCCGCAGTTGGTTCCATTCGTGGAATTAGCAAGAACATAAGAAAATACAAACTTTTCATGTATAAACAATAG 1410 0.4248 MEVEAGKSVSRSAEVDDDGKIKRTGNVFTTTTHIITVVVGAGVLALAWAMAQLGWIPGTITMILFACISVYTYNLIADCYRYPDPINGKRNYTYMQAVHAYLGGTMHVLCGLIQYGKLAGLTVGYTITSSTSLVAIKKAICFHRRGHQAYCKFSNNPYMIGFGMLQILLSQIPNFHKLTYLSTAAAIASFGYAFIGSGLSLAVVVSGKGEPSRIFGNKVGPALSEADKIWRVFSALGNIALACSYATVVYDIMDTLKSYPPECKQMKKANVLGITIMTLLFLLCGGLGYAAFGDHTPGNILTGFGFYEPFWLVALGNVFIVTHMVGAYQVLAQPLFRIIEMGANLVWPRSDFINKEYPTKIGSLTFSFNLFRLIWRTIFVAVATTIAMAMPFFNEFLALLGAIGFWPLIVFFPIQMHIAQKQIKTLSLKWCVLQLLSFVCFLVSVVAAVGSIRGISKNIRKYKLFMYKQ* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1003 469 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 2 464 - -
Vra5g1003 469 Pfam Transmembrane amino acid transporter protein 24 454 IPR013057 -
Vra5g1003 469 PANTHER OS05G0424000 PROTEIN-RELATED 2 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1003 Vra-Chr5 16454458 16457568 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1003 3 465 Organic Solute Cotransporters AT1G10010 52.371 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1003 K24917 - gmx:100802090 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1003 5 16454458 16457568 Vra5g1003 5 16454458 16457568 ECH