Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1261 . . . . . . . . . Aev03g2370 . Ahy13g4346 . Aip03g04823 . . . Amo13g5401 . . . . . . . . Bva01g01097 . . . . . . . . Dod04g1896 . . . . . . Gma08g00853 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g4018 . . . . . . . Mtr8g2648 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr3g1442 . . . Tsu02g01378 . . . . . . . . . . . .
Vvi1g1262 . . . . . . . . . . . . . . . . . . . . Arst3g05814 . . . . . Bva01g01093 . . . . . . . . . . . . . . . Gma08g00851 . . . . . . . . . . . . . . . . . . . Lasa7g03792 . . . . . . . . . . . . . . . . . . . . . . . Phco4g02162 . . . . . Pste3g02435 . . . . . . . Pvu2g1920 . . . . . Spst3g01949 . . . . . . . . . . . . . . . Vimu11g01636 . . . Vivi5g04698 . . .
Vvi1g1263 . . . . Adu03g04398 . . . . Aev03g2368 . Ahy13g4343 . Aip03g04820 . . . . . . Arst3g05811 . . . . . . Bva11g00255 . . . . . . . Dod04g1891 . . . . . . Gma08g00850 . . . . . . . . . . . . . . . . . Lapu3g02686 . Lasa7g04725 . . . . . . . . . . . . . Mepo2g03709 . Mesa13g01463 . . . . . . . Phco4g02163 . . . . Psa7g1982 Pste3g02433 . . . . . . . Pvu2g1921 . Rops2g01514 . Seca12g05490 . Spst3g01954 . . . . Sto6g2534 . . Trre7g04330 . . . Vian1g02809 . Vifa6g01930 . Vimu11g01634 . Viun3g02046 . Vivi5g05885 . . .
Vvi1g1264 . . . . Adu03g04395 . . . . Aev03g2366 . Ahy13g4338 . Aip03g04816 . . . Amo13g5377 . . Arst3g05804 . . . . . . Bva11g00256 . . . . . . . Dod04g1889 . . . . . . Gma08g00848 . . . . . . . . . . . . . . . . . Lapu3g02688 . Lasa7g03789 . . . . . . . . . . . . . Mepo2g03707 . Mesa13g01465 . . . . . . . Phco4g02166 . . . . Psa7g1980 Pste3g02429 . . . . . . . Pvu2g1923 . Rops2g01515 . Seca12g05487 . Spst3g01958 . . . . . . . Trre7g04328 . . . Vian1g02811 . Vifa6g01933 . Vimu11g01629 . Viun3g02043 . Vivi5g04701 . . .
Vvi1g1265 . . . . . . . . . Aev03g2364 . Ahy13g4337 . Aip03g04812 . . . . . . . . . . . . . . . . . . . . . Dod04g1887 . . . . . . Gma08g00846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g2693 . . . . . . . Psa7g1979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1266 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1268 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g1261 Chr1 18179613 18183696 +
Aev Aev03g2370 Chr03 25114913 25123461 +
Ahy Ahy13g4346 Chr13 143136204 143139991 +
Aip Aip03g04823 Chr03 132491555 132495275 +
Amo Amo13g5401 Chr13 154683177 154687108 +
Bva Bva01g01097 Chr01 8996544 9002548 -
Dod Dod04g1896 Chr04 42011647 42015632 +
Gma Gma08g00853 Chr08 6982745 6986299 +
Mal Mal7g4018 Chr7 106530952 106533951 +
Mtr Mtr8g2648 Chr8 37139085 37142818 +
Tpr Tpr3g1442 Chr3 12800187 12803980 -
Tsu Tsu02g01378 Chr02 11950403 11954100 -
Vvi Vvi1g1262 Chr1 18205975 18208242 +
Arst Arst3g05814 Chr3 131755472 131759856 -
Bva Bva01g01093 Chr01 8961129 8962310 -
Gma Gma08g00851 Chr08 6962397 6964652 -
Lasa Lasa7g03792 Chr7 615107353 615109611 -
Phco Phco4g02162 Chr4 42319682 42321937 +
Pste Pste3g02435 Chr3 17202515 17206445 -
Pvu Pvu2g1920 Chr2 34200786 34203041 +
Spst Spst3g01949 Chr3 46383565 46385820 +
Vimu Vimu11g01636 Chr11 20333268 20338327 -
Vivi Vivi5g04698 Chr5 145757650 145761311 +
Vvi Vvi1g1263 Chr1 18308819 18319867 +
Adu Adu03g04398 Chr03 132982926 132991000 +
Aev Aev03g2368 Chr03 25105273 25108493 +
Ahy Ahy13g4343 Chr13 143101919 143105542 +
Aip Aip03g04820 Chr03 132458879 132462446 +
Arst Arst3g05811 Chr3 131751185 131754738 +
Bva Bva11g00255 Chr11 5981824 5987448 -
Dod Dod04g1891 Chr04 41983517 41987837 +
Gma Gma08g00850 Chr08 6955136 6958950 +
Lapu Lapu3g02686 Chr3 49504510 49511915 -
Lasa Lasa7g04725 Chr7 682656647 682659226 -
Mepo Mepo2g03709 Chr2 46410746 46414466 +
Mesa Mesa13g01463 Chr13 17475035 17478173 -
Phco Phco4g02163 Chr4 42329828 42337397 -
Psa Psa7g1982 Chr7 144927840 144933366 +
Pste Pste3g02433 Chr3 17181024 17183614 +
Pvu Pvu2g1921 Chr2 34207740 34215389 -
Rops Rops2g01514 Chr2 22363584 22377438 -
Seca Seca12g05490 Chr12 145800394 145803190 +
Spst Spst3g01954 Chr3 46641027 46642389 -
Sto Sto6g2534 Chr6 32284859 32297186 -
Trre Trre7g04330 Chr7 51249381 51252600 +
Vian Vian1g02809 Chr1 43917952 43931177 -
Vifa Vifa6g01930 Chr6 717661724 717668810 -
Vimu Vimu11g01634 Chr11 20316098 20316704 +
Viun Viun3g02046 Chr3 16481809 16489943 +
Vivi Vivi5g05885 Chr5 163089061 163094330 -
Vvi Vvi1g1264 Chr1 18321223 18322161 +
Adu Adu03g04395 Chr03 132948323 132949822 -
Aev Aev03g2366 Chr03 25100050 25101051 -
Ahy Ahy13g4338 Chr13 143058265 143059808 -
Aip Aip03g04816 Chr03 132418926 132420535 -
Amo Amo13g5377 Chr13 154118209 154119829 -
Arst Arst3g05804 Chr3 131712034 131713581 -
Bva Bva11g00256 Chr11 6000864 6002186 +
Dod Dod04g1889 Chr04 41975752 41977979 -
Gma Gma08g00848 Chr08 6943149 6946410 -
Lapu Lapu3g02688 Chr3 49525840 49526706 +
Lasa Lasa7g03789 Chr7 614748510 614749487 -
Mepo Mepo2g03707 Chr2 46393086 46394581 -
Mesa Mesa13g01465 Chr13 17486756 17487706 +
Phco Phco4g02166 Chr4 42353412 42354272 +
Psa Psa7g1980 Chr7 144872793 144875881 -
Pste Pste3g02429 Chr3 17152405 17153275 -
Pvu Pvu2g1923 Chr2 34239191 34240469 +
Rops Rops2g01515 Chr2 22403907 22405258 +
Seca Seca12g05487 Chr12 145781753 145782700 -
Spst Spst3g01958 Chr3 47627332 47628198 +
Trre Trre7g04328 Chr7 51239184 51240119 -
Vian Vian1g02811 Chr1 43955100 43955966 +
Vifa Vifa6g01933 Chr6 718908212 718908562 +
Vimu Vimu11g01629 Chr11 20250671 20251537 -
Viun Viun3g02043 Chr3 16431072 16433008 -
Vivi Vivi5g04701 Chr5 145796884 145798514 +
Vvi Vvi1g1265 Chr1 18351868 18371377 -
Aev Aev03g2364 Chr03 25064860 25079102 +
Ahy Ahy13g4337 Chr13 143040382 143052623 +
Aip Aip03g04812 Chr03 132399778 132413268 +
Dod Dod04g1887 Chr04 41863857 41913398 +
Gma Gma08g00846 Chr08 6935985 6938370 +
Mtr Mtr8g2693 Chr8 37544323 37553056 +
Psa Psa7g1979 Chr7 144833522 144844034 +
Vvi Vvi1g1266 Chr1 18388572 18389655 +
Vvi Vvi1g1267 Chr1 18395018 18437940 -
Vvi Vvi1g1268 Chr1 18460959 18461298 +
Vvi Vvi1g1269 Chr1 18462111 18463597 -
Vvi Vvi1g1270 Chr1 18500365 18515258 +