Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01093 atgttgtGGTCAACTAGGAATGTTTGTGGACCTGGATTTGGAGTTTTTGATActttatttagtgttttagCTCAGTTTGGAATGTTTGAGGAAGCTAGACTGTATTTTGTAAAGATGAAAAAGTTCAGGGTTTTTCCAAAAGTGCGATCCTGTAATGAGCTTCTGTATAGGCTTTCAAAATCAGGCGAAAGGGAAATGTCCAAGATATTTTTCAGGGACATGGTTCGAGCTGGCATTTCACCTTCGGTTTCTACATACAATATTATGATAGACTATTCTTGCAAAGAAGGGGATTTAGAAACTGCTAGGAAATTATTTGAACAGATGAAACAGATAGGTCTTAAACCAGATATAGTCACTTATAATACTCTTATTGATGGATTTGGAAAGGTAGGGTCATTAAATGAAGCAATTGTTTTATATGAGGAAATGAAAGATACAGGATGTGAACCTGATGGCATAACCTACAATTCCCTGATCAATTGCTTCtgtaaatttgaaagaattcCCCAAGCTTTTGAGTATTTATGTCAGATGAAAAGAAGAGGGCTGAAACCAAATGTTGTAACTTATACTACGTTAGTTGATGCATTTTGCAAGTCAGGTATGATGCTGGAAGcaatcaaattttatgttgACATGAGACGTGTTGGTCTTCTACCCAATGAATATACTTATACATCTCTGATTGATGCGAACtgtaaaaaagataatgtgaATGATGCATTGAAGCTGTCAAAAGAAATGTTGGAGGCAGGACTTAACTTTAACATTGTTTCCTGCACTGCTTTGTTGGATGGCCTTTGTGAAGATGGTAGGATAAAAGAAGCAGAGAAGTTATTGAGGGCAATGTCTAGAGCTGGAGTGGCTCCTACTCTGCAAATTTATACTGCTCTCATTCATGGATACATAAAGGTTAAGATGCCCGAAAGTGTTTTGCATAtactaaaagaaatgaaaagcatGAAACCTGATATGCCACTGTATGGAACTATCATATTGGGTCTTTGCAGAGAAAATAAGATTGAAGAAGCTGAGGCTGTATTACGCAAGATAAAGATTGTGGTCTGTCTCCAAAtagttatatatacacaaccTTTGTGGATGCACATTTTAAGATTGGAAAAACTACTGAGGCACTTAATCTGTTCCAAGAGATGCAGGAATTGGCTATTGAGATA 1181 0.3395 MLWSTRNVCGPGFGVFDTLFSVLAQFGMFEEARLYFVKMKKFRVFPKVRSCNELLYRLSKSGEREMSKIFFRDMVRAGISPSVSTYNIMIDYSCKEGDLETARKLFEQMKQIGLKPDIVTYNTLIDGFGKVGSLNEAIVLYEEMKDTGCEPDGITYNSLINCFCKFERIPQAFEYLCQMKRRGLKPNVVTYTTLVDAFCKSGMMLEAIKFYVDMRRVGLLPNEYTYTSLIDANCKKDNVNDALKLSKEMLEAGLNFNIVSCTALLDGLCEDGRIKEAEKLLRAMSRAGVAPTLQIYTALIHGYIKVKMPESVLHILKEMKSMKPDMPLYGTIILGLCRENKIEEAEAVLRKIKIVVCLQIVIYTQPLWMHILRLEKLLRHLICSKRCRNWLLR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01093 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 47 81 IPR002885 -
Bva01g01093 393 PANTHER OS06G0565000 PROTEIN 1 365 - -
Bva01g01093 393 Pfam PPR repeat 321 352 IPR002885 -
Bva01g01093 393 Pfam PPR repeat 78 110 IPR002885 -
Bva01g01093 393 Pfam PPR repeat 16 43 IPR002885 -
Bva01g01093 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Bva01g01093 393 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 365 - -
Bva01g01093 393 SUPERFAMILY HCP-like 93 317 - -
Bva01g01093 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Bva01g01093 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Bva01g01093 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Bva01g01093 393 Pfam PPR repeat family 186 235 IPR002885 -
Bva01g01093 393 Pfam PPR repeat family 257 292 IPR002885 -
Bva01g01093 393 Pfam PPR repeat family 116 165 IPR002885 -
Bva01g01093 393 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Bva01g01093 393 TIGRFAM PPR: pentatricopeptide repeat domain 295 322 IPR002885 -
Bva01g01093 393 TIGRFAM PPR: pentatricopeptide repeat domain 189 223 IPR002885 -
Bva01g01093 393 TIGRFAM PPR: pentatricopeptide repeat domain 85 117 IPR002885 -
Bva01g01093 393 TIGRFAM PPR: pentatricopeptide repeat domain 224 255 IPR002885 -
Bva01g01093 393 TIGRFAM PPR: pentatricopeptide repeat domain 119 152 IPR002885 -
Bva01g01093 393 TIGRFAM PPR: pentatricopeptide repeat domain 154 188 IPR002885 -
Bva01g01093 393 Gene3D Tetratricopeptide repeat domain 93 252 IPR011990 GO:0005515
Bva01g01093 393 Gene3D Tetratricopeptide repeat domain 272 364 IPR011990 GO:0005515
Bva01g01093 393 Gene3D Tetratricopeptide repeat domain 4 92 IPR011990 GO:0005515
Bva01g01093 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Bva01g01093 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01093 Bva-Chr1 8961129 8962310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01093 11 353 Glycosyltransferase AT1G05670 32.174 3.50e-57 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01093 K17710 - qsu:111991537 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01093 01 8961129 8962310 Bva01g01093 01 8961129 8962310 ECH