Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00851 ATGTTGCTTTTTGCGCGCAACATCGGTGGCAGGGCCTCACTCCGAGTAAGCTCCTTTCATTCCTCACCCCTTCAAAACCCTTTTCCTCTTTTCCTCACTCCTTCATCCCTCTCCTCTCAAAATTCAATTTTTGCTCGCCCCGTGATTTGGTTCACCAGCTTTCTGTGTGTTATAAGATACCCCTTTGTCTCAAAACCTTCTTTTGATGACATTGCTTCCGAATCAATGCGTAGTTTCTTGCAGCAGGACGGTCCTCACTTGTCTGATTCAGCATTGGCACCCATTTGGGTGTCTAAGGCTTTGGTGAAGCTGAAAGGGGACCCTAAATCAGCCCTGAAGTTCTTCAAGGAGGCAGGGGCTCGTGCCGGGTTTCGCCATGCCGCGGAGTCTTATTGCGTTTTGGCTCACATTTTGTTTTGTGGAATGTTTTATCTTGATGCCAGAAGTGTCATCAAAGAGTGGATTTTGTTGGGGAGGGAGTTTCCGGGTTGTGATTTCTTTGATATGTTGTGGTCTACTAGGAATGTTTGTAGGCCTGGTTTTGGAGTGTTTGATACTTTGTTTAATGTTTTAGTGGATTTGGGGATGCTTGAGGAGGCTAGGCAATGCTTTTGGAAGATGAACAAGTTCAGGGTTCTACCAAAAGTGAGGTCTTGTAATGAGCTTCTTCACAGGCTTTCAAAATCAAGCAAAGGGGGATTGGCATTAAGTTTTTTCAAGGATATGGTTGTGGCTGGCCTCTCGCCCTCGGTTTTTACATATAATATGGTGATAGGCTGTCTGGCCAGAGAAGGGGACTTAGAAGCTGCTAGGAGTTTATTTGAAGAAATGAAAGCTAAGGGCATGTTACTGGAAGCAAATAAATTTTTTGTTGACATGATACGTGTTGGTCTTCAACCCAACGAATTTACGTATACATCTCTGATCGATGCAAATTGTAAAATAGGTGATCTCAACGAAGCATTTAAACTGGAAAGTGAGATGCAGCAGGCTGGAGTTAACTTAAATATTGTCACCTACACTGCATTACTGGATGGTCTTTGTGAAGATGGAAGAATGAGAGAGGCAGAAGAATTATTTGGGGCATTGTTGAAAGCTGGATGGACTCTTAATCAACAGATTTATACTTCCCTTTTTCATGGATATATCAAGGCTAAGATGATGGAGAAGGCCATGGATATTTTAGAGGAAATGAACAAGAAAAACTTGAAGCCAGACCTGTTGCTGTATGGAACTAAAATATGGGGTCTTTGCAGACAAAATGAAATAGAAGATTCTATGGCTGTAATTCGGGAGATGATGGATTGTGGTCTGACTGCTAATAGTTACATATATACAACCCTTATAGATGCATATTTTAAGGTTGGGAAAACCACAGAAGCTGTTAATCTATTACAAGAGATGCAGGATTTGGGTATCAAGATAACAGTGGTAACATATGGTGTACTAATTGATGGTTTATGCAAAATAGGTTTAGTTCAACAGGCTGTTAGATACTTTGACCACATGACTAGAAATGGTTTGCAACCTAATATTATGATTTACACTGCTCTGATTGATGGCCTTTGTAAAAATGATTGTCTTGAAGAAGCCAAGAACCTGTTCAATGAGATGCTGGATAAGGGAATCAGTCCAGATAAATTGGTTTATACTTCTTTGATTGATGGGAACATGAAGCATGGAAATCCTGGAGAAGCTTTGAGTTTGCGAAATAGAATGGTTGAAATAGGTATGGAGCTAGACCTGTGTGCTTATACTTCACTGATTTGGGGTTTTTCTCGTTATGGCCAAGTACAGCTGGCAAAGTCGTTGCTAGATGAGATGCTCAGGAAAGGCATTATTCCTGATCAAGTTCTCTGTATTTGTCTATTGAGAAAGTATTATGAACTAGGAGACATCAATGAGGCTCTGGCACTTCATGATGATATGGCGAGGAGGGGCCTAATTTCTGGGACTATTGACATAACAGTTCCCTCTGTACACACTTGA 1989 0.4123 MLLFARNIGGRASLRVSSFHSSPLQNPFPLFLTPSSLSSQNSIFARPVIWFTSFLCVIRYPFVSKPSFDDIASESMRSFLQQDGPHLSDSALAPIWVSKALVKLKGDPKSALKFFKEAGARAGFRHAAESYCVLAHILFCGMFYLDARSVIKEWILLGREFPGCDFFDMLWSTRNVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLISGTIDITVPSVHT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00851 662 Pfam PPR repeat 297 328 IPR002885 -
Gma08g00851 662 Pfam PPR repeat 246 278 IPR002885 -
Gma08g00851 662 Pfam PPR repeat 332 360 IPR002885 -
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Gma08g00851 662 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Gma08g00851 662 TIGRFAM PPR: pentatricopeptide repeat domain 478 512 IPR002885 -
Gma08g00851 662 TIGRFAM PPR: pentatricopeptide repeat domain 584 616 IPR002885 -
Gma08g00851 662 TIGRFAM PPR: pentatricopeptide repeat domain 252 282 IPR002885 -
Gma08g00851 662 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Gma08g00851 662 TIGRFAM PPR: pentatricopeptide repeat domain 374 406 IPR002885 -
Gma08g00851 662 TIGRFAM PPR: pentatricopeptide repeat domain 514 546 IPR002885 -
Gma08g00851 662 TIGRFAM PPR: pentatricopeptide repeat domain 443 476 IPR002885 -
Gma08g00851 662 PANTHER OS06G0565000 PROTEIN 97 282 - -
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Gma08g00851 662 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 97 282 - -
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Gma08g00851 662 Pfam PPR repeat family 441 489 IPR002885 -
Gma08g00851 662 Pfam PPR repeat family 510 556 IPR002885 -
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 616 650 IPR002885 -
Gma08g00851 662 PANTHER OS06G0565000 PROTEIN 280 654 - -
Gma08g00851 662 Gene3D Tetratricopeptide repeat domain 100 282 IPR011990 GO:0005515
Gma08g00851 662 Gene3D Tetratricopeptide repeat domain 283 401 IPR011990 GO:0005515
Gma08g00851 662 Gene3D Tetratricopeptide repeat domain 526 654 IPR011990 GO:0005515
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Gma08g00851 662 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 280 654 - -
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Gma08g00851 662 Pfam PPR repeat 584 613 IPR002885 -
Gma08g00851 662 Pfam PPR repeat 414 438 IPR002885 -
Gma08g00851 662 Pfam PPR repeat 374 402 IPR002885 -
Gma08g00851 662 Pfam PPR repeat 622 648 IPR002885 -
Gma08g00851 662 Pfam PPR repeat 184 210 IPR002885 -
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 581 615 IPR002885 -
Gma08g00851 662 Gene3D Tetratricopeptide repeat domain 417 525 IPR011990 GO:0005515
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Gma08g00851 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 546 580 IPR002885 -
Gma08g00851 662 SUPERFAMILY HCP-like 443 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00851 Gma-Chr8 6962397 6964652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00851 165 657 Glycosyltransferase AT1G05670 27.586 2.68e-45 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00851 K17710 - gmx:100786756 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00851 08 6962397 6964652 Gma08g00851 08 6962397 6964652 ECH
Gma05g01366 05 35310971 35312412 Gma08g00851 08 6962397 6964652 GST