Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01949 ATGTTGCTTTTTGCGCGCAACACAGGTGGCAAGGCCTCAGTCCGAGTAAGCTCCTCCTATTCCTCATCACTTCAAAATCCTTTTTCCCTTTTCTTCACTCCTTCATTCCCCTCCTCTCAAAATTCAATTTTTGCTCGCCCCATGATCTGGTTCACCAGCTTTCTGTGTGTTATGAGATACCCAATTGTCTCTAAACCTTCATTTGATGACATTGCTTCCGAATCAATGCGTAGTTTCTTGCACAAGGACGGTCCCCACCTTTTTGAGTCGGCATTGGCACCCATTTGGGTGTCTAAGGTTTTGGTTAAACTGAAAGGGGACCCAAAATTAGCCCTTAAGTTCTTCACGGAGGCAGGGGCGCGAGCCGGGTTTCGCCATGTGGCGGAGTCTTACTGCGTTTTGGCCCACATTTTGTTTTGTGGGATGTTTTATCTTGATGCCAGAAGTGTAATTAGGGACTGGATTCTGTTGGGGAGGAAATTTCCGGGTTGTGACTTTTTTGATATGATGTGGTCTACCAGAAATGTTTGTAGGCCAGGGTTTGGAGTGTTTGATACCTTGTTTAGTGTTTTAGTGGATTTAGGGATGCTTGACGAGGCTAGGCAATGCTTTTGGAAGATGAACAAGTTCAGGGTTCCGCCAAAAGTAAGGTCTTGTAATGAGCTTCTTCACAGGCTTTCAAAATCAGACAAAAGAAGATTGACATTAAGTTTTTTCAAGGACATGGTTGTGGCTGGCCTCTCGCCCTCCGTTTTTACATATAATACAGTAATAGGCTGTCTGGCCAGAGAAGGGGACTTAGAAACTGCTAAGAGTTTGTTTGAAGAAATGAAAGGTATTGGTCTTAGGCCGGATATTGTCACTTATAATTCTCTGATTGATGGTTATGGAAAGGTAGGGTTGTTAACCAAAGCAGTTATTGTATTTGAGGAAATGAAAGATGTAGGATGTGAACCAGACGTGATAACATATAATTCTCTTATTAATTGCTTTTGTAGATTTGAAAGAATTCCTCAAGCTTTTAACTATCTGCATGAGATGAGGCACAGACGATTACAACCAAATGTTGTAACTTATAGTACAATAATTGATGCATTTTGCAAGGCAGGCATGCTACTGGAAGCAAATAAATTTTTCGTTGACATGATACGTGTGGGTCTCCGACCCAATGAGTTCACGTTTACTTCTCTGATTGATGCAAATTGTAAAGTAGGTGATCTCAATGAAGCATTTAAACTGGTAAGTGAGATGCAGCAGGCTGGTGTTAACTTAAATATTGTCACCTACACTGCATTACTTGATGGTCTTTGTGAAGATGGAAGAATGAGAGAAGCAGAAGAATTATTTGGAGCATTGTTGAAAGCTGGATGGACTCTTAATCAGCAGATTTGTACTTCTCTTCTTCATGGATATATTAAGGGTAATATGATGGAGAATGCCATGTACATCTTAGAGGAAATGAACAAGAGAAACCTCAAACCAGATATATTGTTGTATGGAACTAAAATATGGGGCCTTTGCAGACAAAATAATATACAAGATTCTGAGGCTGTAATTCACGAAATGATGGATTGTGGTATGACTGCAAATAGTTATATATATACAACCCTTATGGATGCATATTTTAAGATAGGGAAAACCACAGAGGCTGTTAATCTATTACAGAAGATGCAAGAATTGGGTATCAAGACAACAGTGGTAACATATGGTGTACTAATTGATGGTTTATGCAAAAAAGGTTTCATTCAAGAGGCTGTTAGTTACTTTGACCACATGGCTATAACTGGATTGCAACCTAATATTATGATATATACAGCTCTGATTGATGGCCTCTGCAAAAATGATTGTGTTGAAGAAGCCAAGAAGTTGTTCAATGAGATGCTGGATAAGGGAATCAGTCCAGATAAATTAGTTTACACTTCTTTGATTAATGGAAACATGAAGCATGGAAATCCGGAAGAAGCTTTGAATTTGCGAAATAAAATGGTTGAAATAGGTATGGAGCTAGACTTGCATGCTTATACTTCACTGATTTGGGGTTTTTCTCGTCGTGGTCAACTACAACAGGCTAAGGCATTCCTATATGAGATGCTCGGGAAAGGCATTATTCCCGATCAAGTTCTCTGTATTTTTCTACTGAGAATGTATTATAAAGTAGGAGACATCAATGAAGCTTTGACACTTCAAGATGATATGATGATGAGGGGCCTAATTTCAGGGACTATTGACATGACAGTTCCTTCTGTACACAGTTGA 2256 0.3949 MLLFARNTGGKASVRVSSSYSSSLQNPFSLFFTPSFPSSQNSIFARPMIWFTSFLCVMRYPIVSKPSFDDIASESMRSFLHKDGPHLFESALAPIWVSKVLVKLKGDPKLALKFFTEAGARAGFRHVAESYCVLAHILFCGMFYLDARSVIRDWILLGRKFPGCDFFDMMWSTRNVCRPGFGVFDTLFSVLVDLGMLDEARQCFWKMNKFRVPPKVRSCNELLHRLSKSDKRRLTLSFFKDMVVAGLSPSVFTYNTVIGCLAREGDLETAKSLFEEMKGIGLRPDIVTYNSLIDGYGKVGLLTKAVIVFEEMKDVGCEPDVITYNSLINCFCRFERIPQAFNYLHEMRHRRLQPNVVTYSTIIDAFCKAGMLLEANKFFVDMIRVGLRPNEFTFTSLIDANCKVGDLNEAFKLVSEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQICTSLLHGYIKGNMMENAMYILEEMNKRNLKPDILLYGTKIWGLCRQNNIQDSEAVIHEMMDCGMTANSYIYTTLMDAYFKIGKTTEAVNLLQKMQELGIKTTVVTYGVLIDGLCKKGFIQEAVSYFDHMAITGLQPNIMIYTALIDGLCKNDCVEEAKKLFNEMLDKGISPDKLVYTSLINGNMKHGNPEEALNLRNKMVEIGMELDLHAYTSLIWGFSRRGQLQQAKAFLYEMLGKGIIPDQVLCIFLLRMYYKVGDINEALTLQDDMMMRGLISGTIDMTVPSVHS 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Spst3g01949 751 Pfam PPR repeat 246 278 IPR002885 -
Spst3g01949 751 Pfam PPR repeat 421 449 IPR002885 -
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Spst3g01949 751 Gene3D Tetratricopeptide repeat domain 594 665 IPR011990 GO:0005515
Spst3g01949 751 Gene3D Tetratricopeptide repeat domain 315 383 IPR011990 GO:0005515
Spst3g01949 751 Gene3D Tetratricopeptide repeat domain 454 524 IPR011990 GO:0005515
Spst3g01949 751 Gene3D Tetratricopeptide repeat domain 384 453 IPR011990 GO:0005515
Spst3g01949 751 Gene3D Tetratricopeptide repeat domain 69 243 IPR011990 GO:0005515
Spst3g01949 751 Gene3D Tetratricopeptide repeat domain 525 593 IPR011990 GO:0005515
Spst3g01949 751 Gene3D Tetratricopeptide repeat domain 244 314 IPR011990 GO:0005515
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Spst3g01949 751 Pfam Pentatricopeptide repeat domain 458 499 IPR002885 -
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Spst3g01949 751 SUPERFAMILY HCP-like 530 727 - -
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Spst3g01949 751 Gene3D Tetratricopeptide repeat domain 666 746 IPR011990 GO:0005515
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Spst3g01949 751 SUPERFAMILY TPR-like 262 558 IPR011990 GO:0005515
Spst3g01949 751 Pfam PPR repeat family 284 333 IPR002885 -
Spst3g01949 751 Pfam PPR repeat family 530 578 IPR002885 -
Spst3g01949 751 Pfam PPR repeat family 599 645 IPR002885 -
Spst3g01949 751 Pfam PPR repeat family 354 403 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 322 356 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 252 285 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 392 425 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 287 321 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 427 460 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 463 496 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 673 705 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 532 563 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 603 635 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 567 600 IPR002885 -
Spst3g01949 751 NCBIfam pentatricopeptide repeat 357 391 IPR002885 -
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Spst3g01949 751 Pfam PPR repeat 184 210 IPR002885 -
Spst3g01949 751 Pfam PPR repeat 712 737 IPR002885 -
Spst3g01949 751 Pfam PPR repeat 673 702 IPR002885 -
Spst3g01949 751 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 230 332 - -
Spst3g01949 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Spst3g01949 751 PANTHER OS03G0856100 PROTEIN 101 530 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01949 518 746 Glycosyltransferase AT1G05670 30.131 1.12e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01949 K17710 - gmx:100786756 1296.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01949 3 46383565 46385820 Spst3g01949 3 46383565 46385820 ECH