Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02043 ATGTTGACTTCTGCATCATCCTCCATCTTCTTCTTAATCCCCACTCCAAAGCCCTCACATTCTTCTCGCTTCACCGTTCGGGCTCACTCCAAATCCCCCACTCTCCCCAACCTCAAAGCCCTCGCCGGCGCCGCAGTCTTCGCCGCCGTCGCCCTCCAATTCCCTTCCGCGCGCGCCTGTCCTCCGCCTCCGCCCCCTCTCCAAACCGACCACCGCCACGAAGAATCCCTCTCGCCGCTCTCAGACCTCCTCGAAACGAACGCCGAGGCCCTCGCCGCTCTCAAGTCCCTCCTCCAGCAGAAGCTCGAGCTCGGCGAGGACGACGAGGCGCTCGCCATCCTCAAGCGCCTAATCGCCGCGCAGCCGGATGCCGTCGAATGGAAGTTCCTCGCAGCGCGCCTCGCCGCCGAGATGGGCGACGCCGACGGTGCGCGTGCCTACTACGAGGAAGTTCTGGCTGCGAATCCACTCTCGTTCGAGGCGCTGTTCGAGAACGCGCTGCTGATGGACCGGTCAGGGGAAGGGGAGGCGGCTATACGGCGGCTGGAGGAGGCGCTGCGCGTGGCCGAGGAGGACAACAAGAAGAAGGAGGCGAGGGACGTGAGGCTCATCATTGCACAGATCATGTTTCTTCAGAAGAATGTGGATGAGGCGTTAGGGATTTATGATGAGCTCACGAAAGAGGATTCGAAGGATTTCAGGCCTTACTTCTGCAGAGGCATGATTTATAGCTTGCTTGATAGAAACGAGGAGGCGAAGGAGCAGTTTGCGAAGTACAGAGAGTTGAGTCCCAAGAAATTTGAGGTGGATGGGTATTTGAGAACCCCTTTGTCAAGGATGAAGCTGTTTAGCACCGATGAGAGCTGA 867 0.5882 MLTSASSSIFFLIPTPKPSHSSRFTVRAHSKSPTLPNLKALAGAAVFAAVALQFPSARACPPPPPPLQTDHRHEESLSPLSDLLETNAEALAALKSLLQQKLELGEDDEALAILKRLIAAQPDAVEWKFLAARLAAEMGDADGARAYYEEVLAANPLSFEALFENALLMDRSGEGEAAIRRLEEALRVAEEDNKKKEARDVRLIIAQIMFLQKNVDEALGIYDELTKEDSKDFRPYFCRGMIYSLLDRNEEAKEQFAKYRELSPKKFEVDGYLRTPLSRMKLFSTDES 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02043 288 SMART tpr_5 125 158 IPR019734 GO:0005515
Viun3g02043 288 SMART tpr_5 159 192 IPR019734 GO:0005515
Viun3g02043 288 SMART tpr_5 233 266 IPR019734 GO:0005515
Viun3g02043 288 SMART tpr_5 199 232 IPR019734 GO:0005515
Viun3g02043 288 Pfam Tetratricopeptide repeat 236 265 IPR019734 GO:0005515
Viun3g02043 288 Pfam Tetratricopeptide repeat 200 228 IPR019734 GO:0005515
Viun3g02043 288 Pfam Tetratricopeptide repeat 129 158 IPR019734 GO:0005515
Viun3g02043 288 Coils Coil 208 228 - -
Viun3g02043 288 PANTHER TRANSMEMBRANE PROTEIN 148 267 - -
Viun3g02043 288 Coils Coil 80 100 - -
Viun3g02043 288 Coils Coil 179 199 - -
Viun3g02043 288 Gene3D Tetratricopeptide repeat domain 197 282 IPR011990 GO:0005515
Viun3g02043 288 SUPERFAMILY TPR-like 89 266 IPR011990 GO:0005515
Viun3g02043 288 Gene3D Tetratricopeptide repeat domain 37 196 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02043 Viun-Chr3 16431072 16433008 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02043 - - gmx:100780000 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02043 3 16431072 16433008 Viun3g02043 3 16431072 16433008 ECH