Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1920 ATGTTGCTTTTTGCGCGCAACATCCGTGGCATGGCCTCACTGCGAGTAAGCTCCTCCTGTTCCTCATCCCTTCAAAACCCTTTTCCCCTTTTCTTCACTCCTTCATTCCTCTCCTCTAAAAATTCAATTTTTGCTCGCCCTATGATTTGGTTCACCAGCTTTCTGTGTGTTATGAGATACCCATTTGTCTCTAAATCTTCATCTGATGACATCGCTTCCGAATCAATGCGTAGTTTCTTGCTACAGGACGGTCCCCACATGTTTGATTCGGCATTGGCACCCGTTTGGGTGTCTGTAGCTTTGGTGAAGCTCAAAGGGGACCCAAAATCAGCCCTTAAGTTCTTTAAGGAGGCAGGGGCTCGAGCCGGGTTTCGCCATGCCGCGGAGTCTTATTGCGTTTTGGCTCACATTTTGTTTTGTGGGAGGTTTTATCTTGATGCAAGAAATGTAATTAGGGAATGGATTTTGTTGGGGAGGGAGTTTCCGGGGGTTGACTTCTTTGATATGTTGTGGTCTACGAGGAATGTTTGTAGGCCTGGGTTTGGAGTGTTTGATACTTTGTTTAGTGTTTTAGTGGATTTAGGGATGCTTGACGAGGCTAGGCAATGCTTTTGGAAGATGAACAAGTTTAGGGTTCTGCCCAAAGTGAGGTCTTGTAATGAGCTTCTTCACAGGCTTTCAAAATCAGACAAAGGGAAATTGGCATTAAGTTTTTTCAAGGACATGGTTGCGGCTGGCCTCTGTCCTTCGGTTTTTACGTATAATACAGTGATTGGCTGTTTGGCCAGAGAAGGGGACTTAGAAATTGCTAGTAGTTTGTTTGAAGAAATGAAAGGTACAGGTCTTGTGCCAGACATTGTCACTTATAATTCTCTTATTGATGGTTATGGAAAGGTAGGACTATTAACCAAAGCAGTTATTGTATTAGAGGAAATGAAAGATGCAGGATGTGAACCAGATGTGATAACATACAATTCTCTTATTAATTGTTTTTGTAGATTTGAAAGAATTCCTCAAGCTTTTAACTATCTGCATGAGATGAAGCAAAGACGGTTGCAGCCAAATGTTGTAACTTATAGTACACTAATTGATGCATTTTGCAAGGCAGGCATGATACTGGAAGCAAATAAATTTTTTGTTGACATGATACGGGTGGATCTTCGACCCAATGAGTTTACATATACCTCTCTGATTGATGCAAATTGTAAAATTGGCGATCTCAATGAAGCGTTTAAACTGGCAAGTGAGATGCAGCAGGCTGGGGTGAACTTAAATATTGTCACCTACACTGCATTACTTGATGGTCTTTGTGAAGATGGAAGAATGAGAGAAGCAGAAGAATTATTTGGGGCATTGTTGAAAGCTGGATGGACTCTTAATCAGCAGATTTATACTTCCCTTTTCCACGGATATATCAAGGCTACTATGATGGAGAAGGCCATGTATATCTTAGAGGAAATGAACAAGAAAAACCTCAAACCAGATGTGTTGTTGTATGGAACTAAAATATGGGGCCTCTGCAAACACAATAATATAGAAGAATCTGAGGCTGTAATTCGTGAAATGATGGATTGTGGTCTGACTGCAAATAGTTATATATATACAACCCTTATGGATGCATATTTTAAGGTTGGAAAAACCACAGAGGCTGTTAATCTAATACAGAAGATGCTAGAATTAGGCATCAAGACTACAGTAGTAACATATGGTGTACTAATTGATGGTTTATGCAAAAAAGGTTTAGTTCAACAGGCTCTTAGTTACTTAGAGCACATGACTCTAACTGGTTTGCAACCTAATATTATGATTTATACATCTCTGATTGATGGTCTCTGTAAAAGTGATTGTGTTGAAGAAGCCAAGGAGTTGTTCAATGAGATGCTGGATAAGGGAATTAGTCCAGATAAATTAGTTTACACTTCTTTGATTGATGCCAATATGAAGCATGGAAATCCTGAAGAAGCTTTGAGTTTGCGAAATAAAATGGTTGAAATAGGTATGGAGCTAGATCTGCATGCGTATACTTCACTTATTTGGGGGTTTTCTCGTTATGGTCAACTACAACAGGCAAAGTCATTCCTAAATGAGATGCTCGACAAAGGCATTATTCCTGATCAAGTTCTCTGTATTTATCTATTGAGAAAGTATCATGAACTAGGAAACATCAATGAAGCTCTGACACTTCATGATGATATGATGAGGAGGGGCCTAATTTCCAGGACTATTGACATAACAGTTCCTTCTGTACACTGTTGA 2256 0.3976 MLLFARNIRGMASLRVSSSCSSSLQNPFPLFFTPSFLSSKNSIFARPMIWFTSFLCVMRYPFVSKSSSDDIASESMRSFLLQDGPHMFDSALAPVWVSVALVKLKGDPKSALKFFKEAGARAGFRHAAESYCVLAHILFCGRFYLDARNVIREWILLGREFPGVDFFDMLWSTRNVCRPGFGVFDTLFSVLVDLGMLDEARQCFWKMNKFRVLPKVRSCNELLHRLSKSDKGKLALSFFKDMVAAGLCPSVFTYNTVIGCLAREGDLEIASSLFEEMKGTGLVPDIVTYNSLIDGYGKVGLLTKAVIVLEEMKDAGCEPDVITYNSLINCFCRFERIPQAFNYLHEMKQRRLQPNVVTYSTLIDAFCKAGMILEANKFFVDMIRVDLRPNEFTYTSLIDANCKIGDLNEAFKLASEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKATMMEKAMYILEEMNKKNLKPDVLLYGTKIWGLCKHNNIEESEAVIREMMDCGLTANSYIYTTLMDAYFKVGKTTEAVNLIQKMLELGIKTTVVTYGVLIDGLCKKGLVQQALSYLEHMTLTGLQPNIMIYTSLIDGLCKSDCVEEAKELFNEMLDKGISPDKLVYTSLIDANMKHGNPEEALSLRNKMVEIGMELDLHAYTSLIWGFSRYGQLQQAKSFLNEMLDKGIIPDQVLCIYLLRKYHELGNINEALTLHDDMMRRGLISRTIDITVPSVHC* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 705 739 IPR002885 -
Pvu2g1920 751 Pfam Pentatricopeptide repeat domain 459 499 IPR002885 -
Pvu2g1920 751 Pfam Pentatricopeptide repeat domain 239 298 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Pvu2g1920 751 SUPERFAMILY TPR-like 319 560 IPR011990 GO:0005515
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Pvu2g1920 751 PANTHER OS06G0565000 PROTEIN 97 743 - -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 567 600 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 603 635 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 218 251 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 463 496 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 357 391 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 322 356 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 505 530 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 673 705 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 532 563 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 427 460 IPR002885 -
Pvu2g1920 751 TIGRFAM PPR: pentatricopeptide repeat domain 287 321 IPR002885 -
Pvu2g1920 751 Pfam PPR repeat 503 527 IPR002885 -
Pvu2g1920 751 Pfam PPR repeat 673 702 IPR002885 -
Pvu2g1920 751 Pfam PPR repeat 712 737 IPR002885 -
Pvu2g1920 751 Pfam PPR repeat 184 210 IPR002885 -
Pvu2g1920 751 SUPERFAMILY HCP-like 529 730 - -
Pvu2g1920 751 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 97 743 - -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Pvu2g1920 751 Gene3D Tetratricopeptide repeat domain 245 313 IPR011990 GO:0005515
Pvu2g1920 751 Gene3D Tetratricopeptide repeat domain 525 592 IPR011990 GO:0005515
Pvu2g1920 751 Gene3D Tetratricopeptide repeat domain 314 383 IPR011990 GO:0005515
Pvu2g1920 751 Gene3D Tetratricopeptide repeat domain 453 524 IPR011990 GO:0005515
Pvu2g1920 751 Gene3D Tetratricopeptide repeat domain 593 662 IPR011990 GO:0005515
Pvu2g1920 751 Gene3D Tetratricopeptide repeat domain 92 244 IPR011990 GO:0005515
Pvu2g1920 751 Gene3D Tetratricopeptide repeat domain 384 452 IPR011990 GO:0005515
Pvu2g1920 751 Gene3D Tetratricopeptide repeat domain 663 735 IPR011990 GO:0005515
Pvu2g1920 751 Pfam PPR repeat family 396 437 IPR002885 -
Pvu2g1920 751 Pfam PPR repeat family 530 578 IPR002885 -
Pvu2g1920 751 Pfam PPR repeat family 319 368 IPR002885 -
Pvu2g1920 751 Pfam PPR repeat family 599 645 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Pvu2g1920 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1920 457 746 Glycosyltransferase AT1G05670 27.986 1.11e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1920 K17710 - gmx:100786756 1304.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1920 2 34200786 34203041 Pvu2g1920 2 34200786 34203041 ECH