Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1264 ATGCACTGCTCTTCACCTCCATCCCTCTTCCATTTCCACCGCTCATCCCTATCCTCAAATGTCTCTTTTGCCTTTCCCAGACCCTCTATATCCCCATCCTACCACCACCGTCGCCTTAGGGTTTCAGCTTCCGCCAACAACAACCCCATTCTCAAAGCCATCAAAACCTCCGCCGGAACCCTTGTCCTCACCGCCGCCGCCGTTTTTATGATGGGCAAGTTCCGTGCGTTGCCGGCGAGAGCGGAGTCGCCGATGGTGTTGTCCGAGGAGAGTGCGACGCCTGAGGAGAAATCTGAAGAGTCATCGCCGTTGTCCGAGTTTCTTGAAAATTCTGAGGCTTTGGGGGCGTTGAAATCGGTGCTGCAGCAGAAGCTGGAGGACGGCGAGGACGGGGAGGCACTGAAGGTCCTGGAGCGGTTAGTGTCGGCGCAGCCGGAGGTGGTGGAGTGGAAGTTTCTGATGGCGAGATTGCTAGGGGAAATGGGGGAGACTGATAGGGCACGCGACGTATTCGAGGAAATTCTTGCTTCGAATCCGCTGTCCTTTGAAGCTCTGTTCGGGAATGCATTGTTAATGGATCAATGTGGAGAGGGCGACGCGGTGATCAGGAGACTGGAAGACGCTTTGAGGACGGCTGAGAATGAGAACAAACTGAAGGAGGCTCGCGATGTGCGGTTGATAATGGCCCAAATGCAGTTTCTTCGGAAGAATGTGGACGAGGCATTGAGGAGCTACGAGGAGCTGGAGAAGGAGGATCCCAGTGATTTCAGGCCTTACTTTTGTAAGGGAATGATATACACCTTGCAGGATAGGAATGAAGAGGCTCGAGAGCAGTTTGCTAAGTATCGGGAGCGTTCGCCCAAGAAGTTTGAGGTGGAGGGGTTCTTGCAGACCCCATTGTCGAGGATGAAGCTGTTTGGGACTGATTCGGAGAGTTGA 939 0.5389 MHCSSPPSLFHFHRSSLSSNVSFAFPRPSISPSYHHRRLRVSASANNNPILKAIKTSAGTLVLTAAAVFMMGKFRALPARAESPMVLSEESATPEEKSEESSPLSEFLENSEALGALKSVLQQKLEDGEDGEALKVLERLVSAQPEVVEWKFLMARLLGEMGETDRARDVFEEILASNPLSFEALFGNALLMDQCGEGDAVIRRLEDALRTAENENKLKEARDVRLIMAQMQFLRKNVDEALRSYEELEKEDPSDFRPYFCKGMIYTLQDRNEEAREQFAKYRERSPKKFEVEGFLQTPLSRMKLFGTDSES* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1264 312 Pfam Tetratricopeptide repeat 236 287 - -
Vvi1g1264 312 Gene3D Tetratricopeptide repeat domain 96 223 IPR011990 GO:0005515
Vvi1g1264 312 PANTHER TRANSMEMBRANE PROTEIN 10 291 - -
Vvi1g1264 312 SUPERFAMILY TPR-like 126 289 IPR011990 GO:0005515
Vvi1g1264 312 Gene3D Tetratricopeptide repeat domain 224 297 IPR011990 GO:0005515
Vvi1g1264 312 Pfam Tetratricopeptide repeat 126 181 - -
Vvi1g1264 312 Coils Coil 202 222 - -
Vvi1g1264 312 MobiDBLite consensus disorder prediction 85 105 - -
Vvi1g1264 312 Coils Coil 265 285 - -
Vvi1g1264 312 SMART tpr_5 148 181 IPR019734 GO:0005515
Vvi1g1264 312 SMART tpr_5 256 289 IPR019734 GO:0005515
Vvi1g1264 312 SMART tpr_5 222 255 IPR019734 GO:0005515
Vvi1g1264 312 Coils Coil 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1264 Vvi-Chr1 18321223 18322161 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1264 - - vvi:100852583 573.548