Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1262 ATGTTAATTTTCTTGCGCAGTCTCTTCGGCATCGGACGCAGAACCTCTCATCGTCTCACCGCCTTCTCCCATAACCCTAATCACATCTCCAACACTTGTTCTTCATCTCCATCTCTAGTTTCTCCTTTCATTTGGTTGAGCTGTTTCATCTGCTTGATTCGCTTTCCCTTTGTTAGCAACCGGCATTTTCACAATTTTGACTGTTTTGACAAGGATTCTGTCCGAGAAATCGTTCGGGAACAGCGCTGGGACGATTTTCGGATTGTGAGTTTGTTTGATTCGGCTTTGGCGCCGATTTGGGCTTCTAGGGTTTTGGTGGAATTGTGCCAGGACGCGAGGCTGGCATTGAGGTTTTTCGAATGGGCCAAGGGTAGGATTGGGTTTCAGCATACTTCGGAGGCCTACTGTATTCTAGTTCACATATTGTTTTGTGCTAGATTTTACTCCGATGCCAATGCGGTCTTGAAAGAATTGATTTGTTTGAGGCGGGTTTTGCCCAGTTGGGATGTGTTTGATTTATTGTGGGCCACGAGGAATGTTTGTGTTCCGGGTTTTGGCGTTTTTGATGCTTTGTTTAGTGCTTTGATTGAGTTGGGGATGCTTGAAGAAGCGAGTGAGTGTTTTTTGAAGATGAGGAAGTTTAGGGTGTTTCCGAAGCCTAGGTCTTGCAATGCTCTTTTACATAGGCTTTCAAAGGTAGGGAGAGGGGATTTGTCTAGGAAGTTTTTTAAAGATATGGGTGCAGCGGGGATCAAACGGTCGGTCTTTACTTATAATATAATGATAGACTATTTGTGCAAAGAAGGGGATTTGGAAATGGCGAGAAGCTTGTTTACACAGATGAAAGAGGCAGGTTTCACGCCGGATATTGTAACTTACAATTCTCTTATTGATGGGCATGGAAAGTTGGGGCTATTGGATGAGTGTATATGTATATTTGAACAAATGAAGGATGCAGATTGTGATCCTGATGTTATAACATATAATGCTTTAATAAACTGTTTTTGTAAATTTGAAAGGATGCCAAAGGCCTTTGAGTTTCTCCATGAGATGAAGGCAAATGGGTTGAAACCAAATGTTGTAACATATAGCACATTTATTGATGCTTTTTGCAAGGAAGGGATGTTGCAAGAGGCAATAAAGTTTTTTGTTGACATGAGGCGAGTTGCACTCACTCCTAATGAATTCACATATACGTCTTTGATTGATGCGAATTGTAAAGCAGGTAACTTGGCTGAAGCTTTGAAGCTGGTTGAGGAGATATTGCAAGCAGGAATTAAGTTGAATGTTGTTACTTATACGGCATTGTTGGATGGTCTTTGTGAAGAAGGGAGGATGAAGGAAGCAGAGGAAGTGTTTAGGGCAATGCTGAATGCTGGGGTGGCCCCTAACCAGGAAACCTATACTGCCCTTGTTCATGGCTTTATTAAAGCTAAAGAAATGGAGTATGCCAAGGATATTTTAAAAGAAATGAAAGAAAAATGCATCAAACCAGACTTGTTGCTCTATGGAACGATTTTGTGGGGCCTTTGCAATGAAAGCAGACTTGAGGAAGCAAAGCTTTTAATTGGCGAAATTAAGGAAAGTGGTATAAATACAAATGCTGTCATTTATACAACTCTTATGGATGCCTATTTCAAGTCAGGTCAAGCCACTGAAGCACTCACTCTGTTAGAAGAAATGCTGGACTTGGGTTTAATCGCCACAGAAGTGACTTATTGTGCATTAATTGATGGCTTGTGCAAATCAGGATTAGTGCAGGAAGCAATGCACCATTTTGGTAGGATGTCAGAAATTGGTTTGCAACCCAATGTTGCAGTTTATACTGCTTTAGTTGATGGCTTGTGTAAAAATAATTGCTTTGAAGTGGCCAAGAAGCTGTTTGACGAAATGCTGGACAAAGGTATGATGCCAGATAAAATTGCTTACACTGCTTTGATTGATGGGAACATGAAGCATGGCAATCTTCAGGAAGCCTTGAATTTGCGAGACAGGATGATTGAAATTGGAATGGAGCTTGATCTGCATGCTTACACTGCCCTGATTTGGGGACTGTCTCACAGTGGTCAAGTGCAAAAAGCAAGGAATTTGCTTGATGAGATGATTGGAAAGGGTGTGCTTCCTGATGAGGTTGTTTATATGTGTTTGATAAAGAAGTATTATGCACTAGGGAAAGTGGATGAAGCTCTAGAACTGCAGAATGAAATGGCAAAGAGGGGTATGATTACTGGTCTTAGTGATCATGCTGTTCCTAGTGTGCAAACTTAA 2268 0.4131 MLIFLRSLFGIGRRTSHRLTAFSHNPNHISNTCSSSPSLVSPFIWLSCFICLIRFPFVSNRHFHNFDCFDKDSVREIVREQRWDDFRIVSLFDSALAPIWASRVLVELCQDARLALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVLPSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDHAVPSVQT* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Vvi1g1262 755 Pfam Pentacotripeptide-repeat region of PRORP 407 562 IPR033443 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 291 325 IPR002885 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 396 430 IPR002885 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 431 464 IPR002885 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 467 499 IPR002885 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 677 710 IPR002885 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 571 605 IPR002885 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 256 290 IPR002885 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 607 639 IPR002885 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 326 360 IPR002885 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 361 394 IPR002885 -
Vvi1g1262 755 NCBIfam pentatricopeptide repeat 536 567 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Vvi1g1262 755 SUPERFAMILY TPR-like 267 564 IPR011990 GO:0005515
Vvi1g1262 755 Gene3D Tetratricopeptide repeat domain 320 409 IPR011990 GO:0005515
Vvi1g1262 755 Gene3D Tetratricopeptide repeat domain 669 751 IPR011990 GO:0005515
Vvi1g1262 755 Gene3D Tetratricopeptide repeat domain 410 521 IPR011990 GO:0005515
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Vvi1g1262 755 Pfam PPR repeat 222 251 IPR002885 -
Vvi1g1262 755 Pfam PPR repeat 188 215 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 673 IPR002885 -
Vvi1g1262 755 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 111 499 - -
Vvi1g1262 755 Gene3D Tetratricopeptide repeat domain 595 668 IPR011990 GO:0005515
Vvi1g1262 755 Gene3D Tetratricopeptide repeat domain 523 594 IPR011990 GO:0005515
Vvi1g1262 755 Gene3D Tetratricopeptide repeat domain 249 319 IPR011990 GO:0005515
Vvi1g1262 755 Gene3D Tetratricopeptide repeat domain 93 248 IPR011990 GO:0005515
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 708 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Vvi1g1262 755 SUPERFAMILY TPR-like 401 634 IPR011990 GO:0005515
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 709 743 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vvi1g1262 755 Pfam PPR repeat 565 596 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Vvi1g1262 755 Pfam PPR repeat family 674 718 IPR002885 -
Vvi1g1262 755 Pfam PPR repeat family 603 649 IPR002885 -
Vvi1g1262 755 Pfam PPR repeat family 254 300 IPR002885 -
Vvi1g1262 755 Pfam PPR repeat family 323 372 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Vvi1g1262 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1262 237 750 Glycosyltransferase AT1G05670 29.231 2.43e-72 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1262 K17710 - vvi:100241074 1511.89