Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5377 ATGTCTTCTTCCACTTTCACTACCGTCCCGCCCTCCTTCTTCTCCTTTGCTCGCTCTCAATCCCTCCCTCCCCCTAACCTCCCTTTCCACATCCCCATTCGCCGCTCCTTCCCTCGATTCACCGTCTCCGCCCATTCCTCTACTTCCAATTCCACCACCGCCACCAATCCCATTCTTCGCAACCTCAAAACCCTAGCCGGTGCAGCCGTATTCGCCGCCGCAATCGCCGTCAAGTTCTCCGCTCTCCCCGCCCGCGCCGAACTACCTCCCACCACCTTCACCTCCGCCGAGCCGTCCCCTCAGATCCTCGAAGAATCCACTACAGAAAACGCCGCCGCCGAAGCAGCTGCAACAACAACAGCAGCAGCATCTTCCTCTTCTTCGTCTTCTTCCCCTCTGTCTGAGTTCCTCGGAACCAACGACGAAGCTGTCAGTGCGCTCAAGTCGCTGCTGCAGCAGAAGCTCGAAGTAGGCGAGGACGAGGAGGCGCTCTCCATTCTCAAACGGTTATGCACCGCGCAACCCGAGGTAACAGACTGGAAGTTCCTCACGGCAAGGCTAATGAGCGAAATAGGCGAAATTGAGAACGCACGCAAGGTGTATGAAGAAATTCTCGCTTCGAATCCCCTCTCGTTCGAGGCTCTATTCGAGAATGCGTTGTTAATGGATCGGAGCGGAGAAGGAGAAGCGGTGATGAAGAGGCTGGAGGAGGCTCTTGCGGTAGCAAAGGAGAAGAACAAGGCGAAGGAAGCGAGGGACGTGAGACTAATCATGGCGCAGATCCAGTTCCTTCAGAAGAATGTTGATGAAGCTTTGGGGATTTATCAGCAATTGACCAAAGAGGACCCTTCTGATTTCCGGCCTTACTTTTGCAGAGGAATGATTTATAGTTTGCTTGATCGGAATGACGAGGCGAAGGAACAATTCGCCAAGTATCGAGAATTGTCGCCAAAGAAGTTTGAGGTTGATGGGTACTTGAGGACTCCTTTGTCAAGGATGAAATTGTTTGGTTCCGACGAAAGCTAA 1026 0.5322 MSSSTFTTVPPSFFSFARSQSLPPPNLPFHIPIRRSFPRFTVSAHSSTSNSTTATNPILRNLKTLAGAAVFAAAIAVKFSALPARAELPPTTFTSAEPSPQILEESTTENAAAEAAATTTAAASSSSSSSSPLSEFLGTNDEAVSALKSLLQQKLEVGEDEEALSILKRLCTAQPEVTDWKFLTARLMSEIGEIENARKVYEEILASNPLSFEALFENALLMDRSGEGEAVMKRLEEALAVAKEKNKAKEARDVRLIMAQIQFLQKNVDEALGIYQQLTKEDPSDFRPYFCRGMIYSLLDRNDEAKEQFAKYRELSPKKFEVDGYLRTPLSRMKLFGSDES* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5377 341 Coils Coil 232 252 - -
Amo13g5377 341 Pfam Tetratricopeptide repeat 253 284 IPR019734 GO:0005515
Amo13g5377 341 Gene3D Tetratricopeptide repeat domain 109 253 IPR011990 GO:0005515
Amo13g5377 341 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 117 340 - -
Amo13g5377 341 PANTHER PROTEIN SLOW GREEN 1, CHLOROPLASTIC 117 340 - -
Amo13g5377 341 MobiDBLite consensus disorder prediction 92 134 - -
Amo13g5377 341 MobiDBLite consensus disorder prediction 89 134 - -
Amo13g5377 341 Coils Coil 261 281 - -
Amo13g5377 341 Gene3D Tetratricopeptide repeat domain 254 327 IPR011990 GO:0005515
Amo13g5377 341 SMART tpr_5 252 285 IPR019734 GO:0005515
Amo13g5377 341 SMART tpr_5 286 319 IPR019734 GO:0005515
Amo13g5377 341 SUPERFAMILY TPR-like 129 319 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5377 Amo-Chr13 154118209 154119829 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5377 - - aip:107632119 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5377 13 154118209 154119829 Amo13g5377 13 154118209 154119829 ECH