Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05487 ATGTCATCCACCTTAGCCACTGCACCATCCTCCTTTCTCTCCTTCAATGCCCCTTCAACAAACACCACACCTTCTCCCATTCTCCCTTTCCCACCCCCACTCCGCCCCCTCCACCGCCCCACCCCTCGACTCACCGTTAGGGCCCACTCCTCCAACGCCCCAATTCTCCACCCCCTCAAAACCCTCGCCGGAGCCGCCGTATTCGCCGCCGTCGCCCTCAAATTCCCCGCCTCCCCCGCCAGAGCCGAGCCTCCACCAACCGTCTCCGAGGTCCTCGAGGAAACCGATCACCGCGACAGCGCCGGCGCCGGAACTCCGTCTCCCCTGTCGGAGCTTCTGGAAGAAAACGAAGAAGCCGTGGACGCCCTCAAGTCCCTGCTGCAGCAGAAGCTAGAGCTCGGCGAGGACGAAGAAGCAATGAAGATCCTGAAACGGTTAATCTCGGCGCAACCCGAAGTTACCGATTGGAAGTTCCTCGCCGCTAGGTTAACGAACGAAATCGGCGACGTGGAAAGCGCGCGTGGTTTTTACGAGGAAATTTTAGCGACGAATCCGTTGTCGTTCGAAGCGCTTTTCGAGAACGCGTTGTTGATGGACCGTTGTGGGGAAGGGGAAGCAGTGATTGAGAGGCTGGAAGAGGCTCTGAGGGTTGCTGAGGAAGAAAACAAGGCTAAAGAAGCCAGGGATGTGAGGTTGATAATGGCTCAGATTCAGTTTCTGCAGAAGAATGTGGATGAGGCTTTGGGTATGTATCAGCAGCTAACCAAAGAGGATCCTAATGATTTCAGGCCTTATTTTTGCAGGGGCATGATTTATAGCTTGCTTGATAAGAATGATGAGGCTAAGGAGCAGTTTGCAAAGTACAGGGAATTGTCACCAAAGAAGTTTGAGGTAGATGGCTACTTGAGGTCCCCTTTGTCAAGGATCAAAGTGTTTGGTACAGATTAG 948 0.5411 MSSTLATAPSSFLSFNAPSTNTTPSPILPFPPPLRPLHRPTPRLTVRAHSSNAPILHPLKTLAGAAVFAAVALKFPASPARAEPPPTVSEVLEETDHRDSAGAGTPSPLSELLEENEEAVDALKSLLQQKLELGEDEEAMKILKRLISAQPEVTDWKFLAARLTNEIGDVESARGFYEEILATNPLSFEALFENALLMDRCGEGEAVIERLEEALRVAEEENKAKEARDVRLIMAQIQFLQKNVDEALGMYQQLTKEDPNDFRPYFCRGMIYSLLDKNDEAKEQFAKYRELSPKKFEVDGYLRSPLSRIKVFGTD. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05487 315 Coils Coil 201 228 - -
Seca12g05487 315 SUPERFAMILY TPR-like 114 294 IPR011990 GO:0005515
Seca12g05487 315 MobiDBLite consensus disorder prediction 24 39 - -
Seca12g05487 315 MobiDBLite consensus disorder prediction 79 108 - -
Seca12g05487 315 SMART tpr_5 262 295 IPR019734 GO:0005515
Seca12g05487 315 SMART tpr_5 120 153 IPR019734 GO:0005515
Seca12g05487 315 SMART tpr_5 228 261 IPR019734 GO:0005515
Seca12g05487 315 MobiDBLite consensus disorder prediction 1 41 - -
Seca12g05487 315 Gene3D Tetratricopeptide repeat domain 107 304 IPR011990 GO:0005515
Seca12g05487 315 Coils Coil 109 133 - -
Seca12g05487 315 Pfam Tetratricopeptide repeat 229 260 IPR019734 GO:0005515
Seca12g05487 315 ProSiteProfiles TPR repeat profile. 262 295 IPR019734 GO:0005515
Seca12g05487 315 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g05487 315 PANTHER TRANSMEMBRANE PROTEIN 183 296 - -
Seca12g05487 315 Pfam Tetratricopeptide repeat 265 294 IPR019734 GO:0005515
Seca12g05487 315 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05487 Seca-Chr12 145781753 145782700 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05487 - - aprc:113855271 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05487 12 145781753 145782700 Seca12g05487 12 145781753 145782700 ECH