Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1889 ATGTCTTCTTCCACCTTCGCCACCGCACCGCCCTCCTTCTTTAACTTCACCTCCAAGCCCACTCACCCACCCCCAAACCTCCGTTTCGACATACCAATTCGCCGCTCCCTCCCTCGCCTCACCGTCAGAGCCCACTCCTCCAATCCCACCTCCACAACCGCCACCACAACGAACCCCTTTCTCCGCAACCTCAAAACCCTAGCCGGAGCCGCCGTCTTCGCCGCCGCCGTCGCCGTCAAATTCTCCTCCCTCCCCGCCCGCGCCGAACCTCCTCCAGCCACCACCACCGAACAACATTCCCCTCAGTCCCTCGAAGAATCCACCACAACAACAACCTCGTCATCTTCCCCATTATCGGAGTTCCTCGAGACGAACGAGGAAGCCGTTGGCGCGCTCAAGTCTCTCCTGCAGCGGAAGCTCGAGGCCGGAGAGGACGAAGAAGCCCTAACCATCCTCAAACGGTTATGCTCCGCTCAACCCGACGTAACGGACTGGAAGTTCCTAACCGCAAGGCTGATGAACGAAACCGGCGACGTGCAAAACGCGCGCCACATGTATGAGGAAATCCTCGCCACGAATCCGCTATCGTTCGAGGCTTTGTTCGAGAACGCGTTGCTGATGGATCGGTGTGGGGAAGGTGAAGCGGTGATGAGGAGGCTGGAGGAGGCGCTTGTGGTGGCCGAGGAGAAGAACAAGGCGAAGGAAGCGAGGGACGTGAGGTTGATAATGGCGCAGATTCAGTTCTTGCAGAAGAATGTTGATGAGGCTTTGGGGATTTATGAGGAGCTGATTGGAGAGGACCCTAAGGATTTCAGGCCTTATTTTTGTAAGGGAATGATTTATAGCTTGCTTGATAGGAACGATGAGGCGAAGGAGCAGTTTGCAAAGTATAGGGAGTTGTCGCCTAAAAAATTTGAGGTTGATGGGTATTTGAGGACCCCTTTGTCTAGGATGAAATTATTTGGTTCAGATGAGAGCTAG 981 0.5494 MSSSTFATAPPSFFNFTSKPTHPPPNLRFDIPIRRSLPRLTVRAHSSNPTSTTATTTNPFLRNLKTLAGAAVFAAAVAVKFSSLPARAEPPPATTTEQHSPQSLEESTTTTTSSSSPLSEFLETNEEAVGALKSLLQRKLEAGEDEEALTILKRLCSAQPDVTDWKFLTARLMNETGDVQNARHMYEEILATNPLSFEALFENALLMDRCGEGEAVMRRLEEALVVAEEKNKAKEARDVRLIMAQIQFLQKNVDEALGIYEELIGEDPKDFRPYFCKGMIYSLLDRNDEAKEQFAKYRELSPKKFEVDGYLRTPLSRMKLFGSDES* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1889 326 Pfam Tetratricopeptide repeat 238 269 IPR019734 GO:0005515
Dod04g1889 326 MobiDBLite consensus disorder prediction 93 122 - -
Dod04g1889 326 SUPERFAMILY TPR-like 115 304 IPR011990 GO:0005515
Dod04g1889 326 MobiDBLite consensus disorder prediction 1 32 - -
Dod04g1889 326 Pfam Tetratricopeptide repeat 274 303 IPR019734 GO:0005515
Dod04g1889 326 MobiDBLite consensus disorder prediction 1 22 - -
Dod04g1889 326 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 81 325 - -
Dod04g1889 326 Coils Coil 217 237 - -
Dod04g1889 326 MobiDBLite consensus disorder prediction 86 122 - -
Dod04g1889 326 Gene3D Tetratricopeptide repeat domain 107 316 IPR011990 GO:0005515
Dod04g1889 326 PANTHER PROTEIN SLOW GREEN 1, CHLOROPLASTIC 81 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1889 Dod-Chr4 41975752 41977979 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1889 - - aip:107632119 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1889 04 41975752 41977979 Dod04g1889 04 41975752 41977979 ECH