Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01636 ATGTTGCTTTTTGCGCGCAGCATCAGCGGCAAGGCCTCACTGCGAGTAAGCTCCTCCTATTCCTCATCCCTTCAAAACCCTTTTACCCTTTTCGCCACTCCTTCATTTCCCTCCTCTAAAAATTCAATTTTTGCTCGCCCTATGATTTGGTTCACCAGCTTTCTGTGTGTTATGAGATGCCCATTTGTCTCTAAATCTTCATTTGATGACATTGCTTCTGAATCAATACGTAGTTTCTTGCAACAGGACGGTCCCCACATGTTTGATTCGGCGTCGGCACCCATTTGGGTGTCTATGGTTTTGGAAAAGCTGAAAGGGGACCCAAAATCCGCTCTTAAGTTCTTCAAGGAGGCAGGGGCTCGAGCCGGGTTTCGCCATGCTGGGGAATCTTATTGCGTTTTGGCTCACATTTTGTTTTGTGGGAAATTTTATCTTGAGGCCAGAAATGTAATTAGGGAATGGATTTTGTTGGGGAGGGAGTTTCCAGGGGTTGACTTCTTTGATATGTTGTGGTCTACAAGGAATGTTTGTAGGCCTGGGTTTGGAGTGTTTGATACTTTGTTTAGTGTTTTAGTGGATTTAGGGATGCTTGACGAGGCTAGGCAATGCTTTTGGAAGATGAACAAGTTTATGGTTCTGCCAAAAGTGAGGTCTTGTAATGAGCTTCTTCACAGGTTTTCAAAATCAGACAAAGGGAAACTGGCATTAAGTTTTTTCAAGGACATGGTGGCGGCTGGCCTCGAGCCTTCGGTTTTTACGTATAATACAGTGATAGGTTGTTTGGCCAGAGAAGGGGACTTGGAAATCGCTAGTAGTTTGTTTGAAGAAATGAAAGGTTTAGGTCTTATGCCGGACATTGTCACTTATAATTCTCTCATTGATGGTTATGGGAAGGTAGGGTTATTAACCAAAGCAGTTATTGTATTAGAGGAAATGAAAGATGCAGGATGTGAACCAGATGTGATAACATACAATTCTCTTATTAATTGTTTTTTTAGATTTGAAAGAATTCCTCAAGCATTTAACTATCTGCATGAGATGAAGCAGAGACAATTGCAGCCAAATGTTGTGACTTATAGTTCACTAATTGATGCATTTTGCAAGGCAGGTATGATACTGGAAGCAAATAAATTTTTTGTTGACATGATACGGGTGGGTCTTCGACCCAATGAGTTTACATATACCTCTCTGATTGATGCAAATTGTAAAATAGGCGATCTCAGTGAAGCGTTTAAATTGGCAAGTGAGATGCAGCAGGCTGGGGTTAACTTAAATATTGTCACCCGCTCTGCATTACTTGATGGTCTTTGTGAAGATGGAAGAATGAGAGAAGCAGAAGAATTATTTGGGGCATTGTTGAAAGCTGGATGGACTCTTAATCAGAAGATTTATACTTCCCTTTTTCAAGGATATATCAAGGCCGCTATGATGGATAAGGCCATGTATATTTTAGAGGAAATGAACAAGAAAAACCTCAAACCAGATCTGTTGTTGTATGGAACTAAAATATGGGGCCTTTGCAAACAAAATAATATACAAGATTCTGAGGCTGTAATTCTAGAAATGATGGATTGTGGTCTGACAGCTAATAGTTATATATATACAACTCTTATGGATGCATATTTTAAGGTTGGGAAAATCACAGAGGCTGTTAATCTATTCAAGAAGATGCTAGAATTAGGTATGAAGACTACAGTGGTAACGTATGGTGTACTAATTGATGGTTTATGCAAAAAAGGTTTAGTTGAACAGGCTCTTAGTTACTTTGAGCAAATGACTCTAACGGGTTTGCAACCTAACATCATGATTTATACATCTCTGATTGATGGTCTCTGTAAAAGTGATTGTGTTGAAGAAGCCAAGGAGTTGTTCAATGAAATGCTGGATAAGGGAATCAGTCCAGATACACTAGTTTACACTTGTTTGATTGATGCGTACATGAAGCATGGAAATCCCAAAGAAGCTTTGAATTTGCGAAATAAAATGGTTGAAACAGGTATGGTGCTAGACCTGCATGCTTATACTTCACTTATTTGGGGTTTTTCTCGTAATGGTCAACTACAACAGGCAAAGTCCTTCCTAGATGAGATGCTCAGCAAAGACATTATTCCTGATCAAGTTCTCTGTATTTATCTATTGAGAAAGTATCGTGAACTAGGAGACATCAATGAAGCTCTGACACTTCATGATGATATGATGAGGAGGGGCCTAATTTCCGAGACTATTGACATAAGAGTTCCTTCTGTACACAGTTGA 2256 0.3963 MLLFARSISGKASLRVSSSYSSSLQNPFTLFATPSFPSSKNSIFARPMIWFTSFLCVMRCPFVSKSSFDDIASESIRSFLQQDGPHMFDSASAPIWVSMVLEKLKGDPKSALKFFKEAGARAGFRHAGESYCVLAHILFCGKFYLEARNVIREWILLGREFPGVDFFDMLWSTRNVCRPGFGVFDTLFSVLVDLGMLDEARQCFWKMNKFMVLPKVRSCNELLHRFSKSDKGKLALSFFKDMVAAGLEPSVFTYNTVIGCLAREGDLEIASSLFEEMKGLGLMPDIVTYNSLIDGYGKVGLLTKAVIVLEEMKDAGCEPDVITYNSLINCFFRFERIPQAFNYLHEMKQRQLQPNVVTYSSLIDAFCKAGMILEANKFFVDMIRVGLRPNEFTYTSLIDANCKIGDLSEAFKLASEMQQAGVNLNIVTRSALLDGLCEDGRMREAEELFGALLKAGWTLNQKIYTSLFQGYIKAAMMDKAMYILEEMNKKNLKPDLLLYGTKIWGLCKQNNIQDSEAVILEMMDCGLTANSYIYTTLMDAYFKVGKITEAVNLFKKMLELGMKTTVVTYGVLIDGLCKKGLVEQALSYFEQMTLTGLQPNIMIYTSLIDGLCKSDCVEEAKELFNEMLDKGISPDTLVYTCLIDAYMKHGNPKEALNLRNKMVETGMVLDLHAYTSLIWGFSRNGQLQQAKSFLDEMLSKDIIPDQVLCIYLLRKYRELGDINEALTLHDDMMRRGLISETIDIRVPSVHS 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01636 751 Pfam PPR repeat family 599 636 IPR002885 -
Vimu11g01636 751 Pfam PPR repeat family 319 368 IPR002885 -
Vimu11g01636 751 Pfam PPR repeat family 530 578 IPR002885 -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 638 670 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 532 563 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 322 356 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 287 321 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 392 425 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 603 636 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 463 495 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 673 705 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 252 285 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 428 460 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 357 391 IPR002885 -
Vimu11g01636 751 NCBIfam pentatricopeptide repeat 567 600 IPR002885 -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 705 739 IPR002885 -
Vimu11g01636 751 Gene3D Tetratricopeptide repeat domain 666 745 IPR011990 GO:0005515
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Vimu11g01636 751 PANTHER ATPASE EXPRESSION PROTEIN 3 106 458 - -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Vimu11g01636 751 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 231 332 - -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Vimu11g01636 751 Pfam Pentatricopeptide repeat domain 458 499 IPR002885 -
Vimu11g01636 751 Pfam Pentatricopeptide repeat domain 239 298 IPR002885 -
Vimu11g01636 751 Gene3D Tetratricopeptide repeat domain 314 383 IPR011990 GO:0005515
Vimu11g01636 751 Gene3D Tetratricopeptide repeat domain 454 523 IPR011990 GO:0005515
Vimu11g01636 751 Gene3D Tetratricopeptide repeat domain 595 665 IPR011990 GO:0005515
Vimu11g01636 751 Gene3D Tetratricopeptide repeat domain 524 594 IPR011990 GO:0005515
Vimu11g01636 751 Gene3D Tetratricopeptide repeat domain 86 244 IPR011990 GO:0005515
Vimu11g01636 751 Gene3D Tetratricopeptide repeat domain 384 453 IPR011990 GO:0005515
Vimu11g01636 751 Gene3D Tetratricopeptide repeat domain 245 313 IPR011990 GO:0005515
Vimu11g01636 751 ProSiteProfiles TPR repeat profile. 531 564 IPR019734 GO:0005515
Vimu11g01636 751 Pfam PPR repeat 638 666 IPR002885 -
Vimu11g01636 751 Pfam PPR repeat 184 209 IPR002885 -
Vimu11g01636 751 Pfam PPR repeat 712 737 IPR002885 -
Vimu11g01636 751 Pfam PPR repeat 673 702 IPR002885 -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Vimu11g01636 751 Pfam PPR repeat 421 449 IPR002885 -
Vimu11g01636 751 Pfam PPR repeat 386 417 IPR002885 -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Vimu11g01636 751 SUPERFAMILY HCP-like 530 730 - -
Vimu11g01636 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01636 495 742 Glycosyltransferase AT1G05670 26.415 3.71e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01636 K17710 - gmx:100786756 1265.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01636 11 20333268 20338327 Vimu11g01636 11 20333268 20338327 ECH