Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01958 ATGTTGACATCTGCATCATCCTCCATCTTCTCCTTTATCCCCGCCACGACGCCCTCACATTCTCCTCGCTTCACCGTCCGGTCCCAATCCAAATTCCCCTCTTTCCCCAATCTTAAAACCCTCGCCGGCGCCGCAGTCTTCGCCGCCGTCGCGCTCCAATTTCCCTCCGCACGCGCCTCCCCTCCGCCTCCGCCCCTTATCCAAACCGACCATAGCCAGGATGAATCCCTTTCGCCGCTCTCCGACCTCCTCGAAACGAACGCCGAGGCCCTCGCCGCTCTCAAGTCCCTTCTCCAGCAGAAGCTCGAGCTGGGCGAGGACGACGAAGCGTTTGCCATCCTCAAGCGACTGATTGACGCGCAGCCGGACGCCGTCGACTGGAAGTTCCTCGCCGCGCGCCTCGCCGCCGAGACCGGCGACGCCGACGCCGCGCGGACCTACTACGAGGAGGTCCTGGCGATGAACCCGCTCTCGTTCGAGGCGCTGTTTGAAAACGCGCTGCTGATGGACCGGTCAGGGGAAGGGGAGGCTGCGATGCGGCGGCTGGAGGAGGCGCTGCGCGTGGCGGAGGAAGACAACAAGAGGAAGGAGGCGCGGGACGTGAGGCTCATCATGGCGCAGATTATGTTTCTGCAGAAGAATGTCAATGAAGCGTTAGGGATTTATGATCAGCTTACGAAAGAGGATTCTAAGGATTTCAGACCTTACTTTTGCAGAGGCATGATTTATAGCTTGCTTGATAGAAACGACGAGGCGAAGGAGCAATTTGAAAAATACAGAGAGTTGAGTCCCAAGAAATTTGAGGTGGATGGGTATTTGAGAACCCCTTTGTCAAGGATGAAGCTGTTTAGCACCGATGAGAGCTGA 867 0.5767 MLTSASSSIFSFIPATTPSHSPRFTVRSQSKFPSFPNLKTLAGAAVFAAVALQFPSARASPPPPPLIQTDHSQDESLSPLSDLLETNAEALAALKSLLQQKLELGEDDEAFAILKRLIDAQPDAVDWKFLAARLAAETGDADAARTYYEEVLAMNPLSFEALFENALLMDRSGEGEAAMRRLEEALRVAEEDNKRKEARDVRLIMAQIMFLQKNVNEALGIYDQLTKEDSKDFRPYFCRGMIYSLLDRNDEAKEQFEKYRELSPKKFEVDGYLRTPLSRMKLFSTDES 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01958 288 Gene3D Tetratricopeptide repeat domain 68 279 IPR011990 GO:0005515
Spst3g01958 288 Pfam Tetratricopeptide repeat 129 156 IPR019734 GO:0005515
Spst3g01958 288 Pfam Tetratricopeptide repeat 236 265 IPR019734 GO:0005515
Spst3g01958 288 Coils Coil 80 100 - -
Spst3g01958 288 SMART tpr_5 199 232 IPR019734 GO:0005515
Spst3g01958 288 SMART tpr_5 125 158 IPR019734 GO:0005515
Spst3g01958 288 SMART tpr_5 159 192 IPR019734 GO:0005515
Spst3g01958 288 SMART tpr_5 233 266 IPR019734 GO:0005515
Spst3g01958 288 PANTHER TRANSMEMBRANE PROTEIN 16 267 - -
Spst3g01958 288 Coils Coil 179 199 - -
Spst3g01958 288 SUPERFAMILY TPR-like 90 266 IPR011990 GO:0005515
Spst3g01958 288 ProSiteProfiles TPR repeat profile. 233 266 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01958 Spst-Chr3 47627332 47628198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01958 104 188 EF-hand Containing Proteins AT2G32450 34.118 2.48e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01958 - - gmx:100808986 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01958 3 47627332 47628198 Spst3g01958 3 47627332 47628198 ECH