Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04698 ATGTTGCATTTTGGGCGCAACCTCTTCCACATCACTGGTGTTCGAGTAAGCTCTTTCTATTCACCTTTTCACTCAAGCCCATTTCCCATTTTCTTCACCCTAGCAGCCCCATCTTCTCAAAATTCAATTTTTGGTTCTCCCATGATTTTGTTTACTAGCTTCTTCTGTGTTGTTAAATACCCTTTTACCTCAAAACCTACATTTGATGACACTGTTTCAGAATCAATGTCTAGTTTATTACAGAATGATGGTGCTCACCACGTGTTTGATTCCGCACTTGCACCCATTCGGGTGTCTAAGGTTTTGGTGAATTTGAAAGGGGACCCAAAGTCAGCATTGAAATTCTTCCGTAGGGCTGGGAATCAAGTTGGGTTTCGCCACACCACTGAGTCTTATTGTATTCTTGTTCATATTTTGTTCTGTGGGATGTTTTATTTTGATGCGAAGAATGTTATTAAAGAGTGGATTTTGTTGAGGAGGGAGATTCCGGGCTGTGATTGGTTTGATATGTTGTGGATGACTAGGAATGTGTGTCGGACAGGGTTCGGGGTGTTTGATGCTTTGTTTGGTGTTTTGGTTGAGTTGAGGATGCTTGAAGAAGCTAGGCAATGTTTTGGGAAGATGAATAAGTTCAGGGTACTGCCGAAAGTGCGGTCCTGTAACGAGCTTCTCCACAAGCTTTCAAAATCAAAACGAGGGAAGTTGTCCTTGAGTTTTTTCAATGAGATGGTTGGGGCTGGCCTTTCGCCCTCGGTTTTCACGTATAATATAATGATAGGCTATTTGACTAAAGAAGGGGAGTTAGAAACTGCTAGGAGTTTGTTTGAACGGATGAAACATACAGGCCTTAAGCCGGATGTAGTCACTTATAATTCTCTCATTGATGGGTATGGAAAGGCGGGATTATTGAGTGAAGCGGTTTTTGTTTACGAGGAAATGAAGGATGCAGGATGTGAACCCGATGTGATAACATACAATTCTTTAATCAATTGTTTCTGTAAATTTAAAAAGCTTCCTCGAGCTTTTCAGTATCTGCACGAGATGAAGGAAAGAGAGTTGAAGCCAAATGTTGTAACTTACAGTACAATGATAGACGCGTTTAGCAAGGCTGGCATGATGCTGGAAGCGATTAAATTTTTTGTTGACATGATACGTGTTGGTCTTCAACCCAATGAGTTTACATATACGTCTTTGATTGATGCAAATTGTAAAATAGGTGATCTGAATGAAGCATTTAAACTGGCAAATGAGATGTTGCAGGCTGGTCTTAGCTTAAATGTTGTCACCTATACTGCATTACTCGACGGTCTTTGTGAGGATGGTAGGATGAAAGAGGCGGACAAACTATTCAGGGCATTGTCGGAAGCTGGAGTAGCTCTTAATCTGCAAATTTACACTTCCCTTATTCATGGATATATCAAGGCTAAGATGGTAGATAAGTCTATTGATATTTTAGAGGAAATGAACAAGAAAAACTTCAAACTAGATTCGGCGCTGTACGGAACCAAAATATGGGGCCTTTGTAGCCAAAATAAAATACAAGAATCTGAGGCTGTGATACGTGAGATGAAGGACCGTGGTTTGACGGCAAACAGTTACATATACACATCACTTTTGGATGCATATCTTAAGGTTGGAAAAATCACAGAGGTTGTTAATCTATTACAAGAGATGCAGGAATTAGGCGTCGAGCCAACGGTTGTGACCTATGGTGTGTTAATTGATGGTTTGTGCAAAAAAGGTTTAGTTCAACAGGCTGTCGATTACTTTGAACACATGACCAAAAATGGTTTGCAACCTAATATTATGACTTATACTGCACTGATTGATGGCCTTTATAAAAATGATCGTGTCGAAGCAGCTAATAACCTGTTCGATGAAATGCTGGATAAGGGAATCAGACCAGATAAGTTAGTTTATACTGCTTTGATTGATGGGAACCTTAAGCATGGTAATCCTGAAGAAGCTTTGAGTTTGCGAAATAGAATGATTGAATCGGGTATGGAGCTTGATATGCATGCTTATACTTCATTGGTTTGGGGTTTTTCGCGTTGCGGTAAATTACGACAGGCCAAGTCATTTTTTTATGAGATGCTAAGAGAGGGCATCACTCCTGATCTGATTCTCTGTATTAGTCTTCTGAAAAAATATTATGAACTAGGAGACATATACGAAGCCCAGGAACTTCATAATGATATGATAAGGAGGGGACTAGTTGCTAAAACAATTGACATAAGAGTTTCTTCTACACACACTTGA 2259 0.3984 MLHFGRNLFHITGVRVSSFYSPFHSSPFPIFFTLAAPSSQNSIFGSPMILFTSFFCVVKYPFTSKPTFDDTVSESMSSLLQNDGAHHVFDSALAPIRVSKVLVNLKGDPKSALKFFRRAGNQVGFRHTTESYCILVHILFCGMFYFDAKNVIKEWILLRREIPGCDWFDMLWMTRNVCRTGFGVFDALFGVLVELRMLEEARQCFGKMNKFRVLPKVRSCNELLHKLSKSKRGKLSLSFFNEMVGAGLSPSVFTYNIMIGYLTKEGELETARSLFERMKHTGLKPDVVTYNSLIDGYGKAGLLSEAVFVYEEMKDAGCEPDVITYNSLINCFCKFKKLPRAFQYLHEMKERELKPNVVTYSTMIDAFSKAGMMLEAIKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLANEMLQAGLSLNVVTYTALLDGLCEDGRMKEADKLFRALSEAGVALNLQIYTSLIHGYIKAKMVDKSIDILEEMNKKNFKLDSALYGTKIWGLCSQNKIQESEAVIREMKDRGLTANSYIYTSLLDAYLKVGKITEVVNLLQEMQELGVEPTVVTYGVLIDGLCKKGLVQQAVDYFEHMTKNGLQPNIMTYTALIDGLYKNDRVEAANNLFDEMLDKGIRPDKLVYTALIDGNLKHGNPEEALSLRNRMIESGMELDMHAYTSLVWGFSRCGKLRQAKSFFYEMLREGITPDLILCISLLKKYYELGDIYEAQELHNDMIRRGLVAKTIDIRVSSTHT 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 706 740 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 705 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Vivi5g04698 752 Pfam PPR repeat 422 451 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Vivi5g04698 752 Pfam PPR repeat 534 563 IPR002885 -
Vivi5g04698 752 Pfam PPR repeat 712 738 IPR002885 -
Vivi5g04698 752 Pfam PPR repeat 464 493 IPR002885 -
Vivi5g04698 752 Pfam PPR repeat 504 528 IPR002885 -
Vivi5g04698 752 Gene3D Tetratricopeptide repeat domain 593 662 IPR011990 GO:0005515
Vivi5g04698 752 Gene3D Tetratricopeptide repeat domain 386 454 IPR011990 GO:0005515
Vivi5g04698 752 Gene3D Tetratricopeptide repeat domain 663 736 IPR011990 GO:0005515
Vivi5g04698 752 Gene3D Tetratricopeptide repeat domain 243 313 IPR011990 GO:0005515
Vivi5g04698 752 Gene3D Tetratricopeptide repeat domain 314 385 IPR011990 GO:0005515
Vivi5g04698 752 Gene3D Tetratricopeptide repeat domain 455 524 IPR011990 GO:0005515
Vivi5g04698 752 Gene3D Tetratricopeptide repeat domain 525 592 IPR011990 GO:0005515
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Vivi5g04698 752 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 104 450 - -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 358 392 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 323 357 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 288 322 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 428 461 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 639 671 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 253 287 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 464 496 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 674 706 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 533 567 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 604 636 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 568 602 IPR002885 -
Vivi5g04698 752 NCBIfam pentatricopeptide repeat 393 427 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Vivi5g04698 752 Gene3D Tetratricopeptide repeat domain 102 242 IPR011990 GO:0005515
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Vivi5g04698 752 Pfam PPR repeat family 356 404 IPR002885 -
Vivi5g04698 752 Pfam PPR repeat family 567 614 IPR002885 -
Vivi5g04698 752 Pfam PPR repeat family 285 334 IPR002885 -
Vivi5g04698 752 Pfam PPR repeat family 635 681 IPR002885 -
Vivi5g04698 752 Pfam PPR repeat family 215 260 IPR002885 -
Vivi5g04698 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Vivi5g04698 752 SUPERFAMILY HCP-like 442 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04698 Vivi-Chr5 145757650 145761311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04698 371 738 Glycosyltransferase AT1G05670 28.079 3.08e-49 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04698 K17710 - gmx:100786756 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04698 5 145757650 145761311 Vivi5g04698 5 145757650 145761311 ECH