Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02435 TCGAACTGTTTTCACAAAAAATGTTGCCTTTTGCGCGCAACATCGGTGGCAGGACTTCACTCCGAGTAAGCTCCTTCCATTCGTCACCCTTTCAAAACCCTTTTCCTCTTTTCTTCACTCTTTCATCCCACTCCTCTCAAAATTCAATTTTCGCTCGCCCCATAATTTGCTTCACTAACTTTCTGTGTGTTATAAGATACCCTTTTGTCTCAAAACCTTCTTTTGATGACATTGCTTCCGAATCAATACGTAGTTTCATGCAACAAGATGGTCCCCACATGTTTGATTCAGCATTGGCACCCATTTGGGTGTCTAAAGTTTTGGTGAAACTGAAAGGGGACCCTAAATCAGCTTTGAAGTTCTTCAAGGAGGCTGGAGCTCGACCGGGGTTTCGTCATGCTGCACAGTCTTATTGCGTTTTGGCTCACATTTTGTTTTGTGGGATGTCTTATCTTGAAGCCAGAAGTGTAATTAAGGATTGGATTTTGTTGGGGAGGGAATTTCCGGGTTGTGATTTCTTTGATATGTTGTGGTCTACTAGGAATGTTTGTAGGCCTGGGTTTGGAGTTTTTGATACTTTGTTTAGTGTTTTAGTAGATTTGGGGATGCTTGAGGAGGCTAGGCAATGCTTTTGGAAGATGGACAAGTTCAGGGTTCTGCCAAAAGTGAGGTCCTGTAACGAGCTTCTTCACAGGCTCTCAAAATCCGGAAAATGGAAGTTGGCATCAAGTTTTTTCAAAGATATGGTCGTATCTGGCCTTTCACCCTCGGTTTTTACATATAATATAGTGATTGGCTGTCTGGTCAGAGAAGGGGACTTAGAAACTGCTAGGAGTTTATTTGAAGAAATGAAAGGTATGGCGCTTAGGCCAGACATTGTCACTTACAATTCTCTCATTGATGGGTATGGAAAGGTAGGATTACTAACCAGTGCAGTCAATGTATTTGACGAAATGAAAGATGCAGGCTGTGAACCTGATGTAATAACGTACAATTCTCTTATTAATTGTTTTTGTAAATTTGAAAGACTTCCTCAAGCTTTTGAGTATATGTATGAGATGAAGCAAAGGGGGTTGCAACCAAATGTTGTAACTTATAGTACATTAATTGATGCATTTTGCAAGGCAGGCATGATACTGGAAGCAAATAAATTTTTGGTTGACATGATACGGGTTGGCCTTGAACCCAATGAGTTTACATATACATCTCTGATTGATGCAAATTGTAAAATAGGTGATCTTAATGAAGCATTTAAACTAGAAAGTGAGATGCGGCAGGCTGGAGTTAACTTAAATATTGTCACCTTCACTGCATTACTGGATGGTCTTTGTGAAGATGGAAGAATGAGAGAGGCTGACGAATTATTTGGAGCATTGTTAAAAGCTGGATGTACTCTTAATCAACAGATTTATACTTCCCTTTTACATGGATATATCAAGGCTAAGATGATAGAAAATGCCATGGATATTTTAGAGGAAATGAACAAGAACTTCAAACCAGATATGTTGTTGTATGGAACTAAAATATGGGGCCTTTGCAGACAAAATAAAATCCAAGATTCTAAGGCTGTAATTCATGAGATGATGGATTATGGTCTGACTCCAAATAGTTACATATATACAACCCTTATGGATGCATATTTTAAGGTTGGGAAAACCACAGAGGCTGTTAATCTATTACAAGAGATGCAAGAATTGGGTATCGAGGCAACAGTTGTAACATATGGTGCCCTAGTTGATGGTTTATGCAAAAAAGGTTTAGTTCAACAGGCTCTTAGTTACTTTGATCACTTGACTAGAACTGGTTTGCAACCTAATATTATGGTTTATACTGCTCTGATTGATGGCCTTTGCAAAAATGATTGTGTTGAAGAAGCCAAGAAGCTGTTCAATGAGATGCAGGATAAGGGAATCAGTCCAGATAAATTAGTTTACACTTCTTTGATTGTTGGGAACATGAAGCATGGAAATCCTGAAGAAGCTTGGAATTTACGAAATAGAATGGTTGAAATAGGTATGGAGCTGGACCTGCATGTGTATACTTCACTTATTTGGGGTTTTTCTCGTTATGGTCAAGTACAACAGGCAAAGTCATTGTTGGATGAGATGCTCAGGAAAGGCATGATTCCTGATCAAGTTCTCTGCATTTGTCTATTGAGAAAGTACTATGAATTAGGAGACATCAATGAAGCTCTGGCACTTCATGATGATATGATGAGAAGGGACCTAATTTCTGGGACTATTGACATAACAGGGATTCATGCTTTACATACTTGGTTTGCTGTTCCTTATTTTGGTGGCCTACAATCAAGATTACTTCATTTTCTACCAAAGTTCAATAAGCATCATGTCATCATTGAAATGAATTTGATGCATCAATCATCATTATATAATGGCAACTGGCTTATAATGCATGACTGTACTGTCATGATATTCAATGAATTTGGATTTGGATACATTTTAAATCCTACGAAGAAATTCACTAATAAAGCCCATAAAACCCTTTATTCAATTTTGATTCATACCCATAAGTCTTACAAACACTTCCATCTACAGAGATCAGATGTGATGGAATCCAAAGAA 2582 0.3815 MLPFARNIGGRTSLRVSSFHSSPFQNPFPLFFTLSSHSSQNSIFARPIICFTNFLCVIRYPFVSKPSFDDIASESIRSFMQQDGPHMFDSALAPIWVSKVLVKLKGDPKSALKFFKEAGARPGFRHAAQSYCVLAHILFCGMSYLEARSVIKDWILLGREFPGCDFFDMLWSTRNVCRPGFGVFDTLFSVLVDLGMLEEARQCFWKMDKFRVLPKVRSCNELLHRLSKSGKWKLASSFFKDMVVSGLSPSVFTYNIVIGCLVREGDLETARSLFEEMKGMALRPDIVTYNSLIDGYGKVGLLTSAVNVFDEMKDAGCEPDVITYNSLINCFCKFERLPQAFEYMYEMKQRGLQPNVVTYSTLIDAFCKAGMILEANKFLVDMIRVGLEPNEFTYTSLIDANCKIGDLNEAFKLESEMRQAGVNLNIVTFTALLDGLCEDGRMREADELFGALLKAGCTLNQQIYTSLLHGYIKAKMIENAMDILEEMNKNFKPDMLLYGTKIWGLCRQNKIQDSKAVIHEMMDYGLTPNSYIYTTLMDAYFKVGKTTEAVNLLQEMQELGIEATVVTYGALVDGLCKKGLVQQALSYFDHLTRTGLQPNIMVYTALIDGLCKNDCVEEAKKLFNEMQDKGISPDKLVYTSLIVGNMKHGNPEEAWNLRNRMVEIGMELDLHVYTSLIWGFSRYGQVQQAKSLLDEMLRKGMIPDQVLCICLLRKYYELGDINEALALHDDMMRRDLISGTIDITGIHALHTWFAVPYFGGLQSRLLHFLPKFNKHHVIIEMNLMHQSSLYNGNWLIMHDCTVMIFNEFGFGYILNPTKKFTNKAHKTLYSILIHTHKSYKHFHLQRSDVMESKE 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Pste3g02435 854 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 461 735 - -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Pste3g02435 854 Pfam PPR repeat 421 449 IPR002885 -
Pste3g02435 854 SUPERFAMILY HCP-like 529 729 - -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 566 600 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 463 488 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 322 356 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 427 460 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 531 564 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 252 285 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 287 321 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 602 634 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 357 391 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 392 425 IPR002885 -
Pste3g02435 854 NCBIfam pentatricopeptide repeat 672 704 IPR002885 -
Pste3g02435 854 Gene3D Tetratricopeptide repeat domain 386 476 IPR011990 GO:0005515
Pste3g02435 854 Gene3D Tetratricopeptide repeat domain 477 583 IPR011990 GO:0005515
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 490 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 599 633 IPR002885 -
Pste3g02435 854 Pfam PPR repeat family 598 642 IPR002885 -
Pste3g02435 854 Pfam PPR repeat family 284 333 IPR002885 -
Pste3g02435 854 Pfam PPR repeat family 214 261 IPR002885 -
Pste3g02435 854 Pfam PPR repeat family 528 577 IPR002885 -
Pste3g02435 854 Pfam PPR repeat family 354 403 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Pste3g02435 854 Gene3D Tetratricopeptide repeat domain 244 313 IPR011990 GO:0005515
Pste3g02435 854 Gene3D Tetratricopeptide repeat domain 72 243 IPR011990 GO:0005515
Pste3g02435 854 Gene3D Tetratricopeptide repeat domain 314 385 IPR011990 GO:0005515
Pste3g02435 854 Pfam PPR repeat 672 700 IPR002885 -
Pste3g02435 854 Pfam PPR repeat 710 735 IPR002885 -
Pste3g02435 854 Pfam PPR repeat 463 489 IPR002885 -
Pste3g02435 854 Pfam PPR repeat 184 210 IPR002885 -
Pste3g02435 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 634 668 IPR002885 -
Pste3g02435 854 Gene3D Tetratricopeptide repeat domain 584 756 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02435 Pste-Chr3 17202515 17206445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02435 386 746 Glycosyltransferase AT1G05670 29.863 2.09e-41 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02435 3 17202515 17206445 Pste3g02435 3 17202515 17206445 ECH