Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1269 ATGATGGGGGACAAGGGAGAGAAAGAGTGTGCAACTGCAAGCTCTCCAATAGAGTTGGGATGTGGGGAAGGAGATGAGAGTGGGAATAAGAGCTCCATGCGGACTGTAGAGACCTTGCTGAGACTGGTTCCAGTGGCTCTCTGCACAGTTTCACTTGTTGTGATGCTCAAAAACTCTCAAACCAATGACTTCGGCTCCCTCTCCTACTCTGACCTTGGAGCCTTCAGGTATCTTGTGCATGCTAATGGAATTTGTGCTGGCTACTCCCTTCTTTCAGCCATCTTTACAGCTATGCCTCGCCCTCCTACGATGTCCCGAGCTTGGACTTTCTTCTTGCTCGATCAGGTGTTGACATACTTAATACTGGCTGCTGGAGCGGTTTCAACTGAGGTGGTGTATTTGGCCTACAAGGGAGATGAAGCAGTCACATGGAGTGATGCATGCAGCTCCTTTGGGGGCTTCTGCCAGAAGACCACTGCATCCATCTCCATCACTTTTGTTACAGTCCTTTGCTATGCTGTGCTTTCCCTCATCTCCTCCTACAAACTCTTCAGCAAGTACGACGCCCCCATTTGCTTCAATGGCAAAGGCATCGAGATAGCTGCATTTCATAGTTGA 618 0.4935 MMGDKGEKECATASSPIELGCGEGDESGNKSSMRTVETLLRLVPVALCTVSLVVMLKNSQTNDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIFTAMPRPPTMSRAWTFFLLDQVLTYLILAAGAVSTEVVYLAYKGDEAVTWSDACSSFGGFCQKTTASISITFVTVLCYAVLSLISSYKLFSKYDAPICFNGKGIEIAAFHS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1269 205 Pfam Casparian strip membrane protein domain 31 171 IPR006702 -
Vvi1g1269 205 PANTHER CASP-LIKE PROTEIN 4A4 30 185 - -
Vvi1g1269 205 NCBIfam plant integral membrane protein TIGR01569 40 182 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1269 Vvi-Chr1 18462111 18463597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1269 22 157 Miscellaneous Gene Families AT1G79780 26.752 1.08e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1269 - - vvi:100249479 410.609