Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst11g01377 | ATGAAACAGGCAAACCTTTTCTCCATCTCACTCTTCCTACTCTTTTGCTCCACCACCTTGGCCATTTCACCTGCACCTGCAGCAGCACCAAAAGCCCCTGCAGCAAAAACTCCACATACTCCAAATGCTGCAGCACCATCACCAAAACCATTAGTCCCTACATTACCTCAGTCTCCAGACTCGCCTGACTCTGTCCCCGATGACATTACCAGAATCCTCAAAAAGGCCAAAATGTTCTCAACCTTAATCCGCCTCCTGAAAACTACTGAAATCATGAACAACATCAACTCACAGCTCATAACAGCCAAGAGTGGGGGCATAACCATTCTTGCACCAGATGATTCTGCCTTTTCCAACCTCAAAGCTGGCTTCCTCAACTCCCTTAATGAAGGACAGAAAATCGAACTTGTGCAGTTTCACATTTTGCCAGAGTTTGTGTCCACCTCAAACTTTGATTCTCTAAGCAACCCTGTGCAGACGGTGGCTGGAAAAGACCCTGTAAGGCTTCCACTGAATGTGAACGCATTAGGTAACAGTGTCAACATTTCAACTGGGGTGGTCAATGCCACCATTCTGGGGGTAGTGTACTCGGATAATAAACTTGGGATTTATCACGTGGACAAGGTGCTTCTTCCTCTAGATTTCTTTGTAACCGATAAGGCTCCAGCTTTGGCTCCTTCATCTCTTGCAAAGGCTCCCAAAGATGCGAAGGATAACTCTTCCGAGGATGATCAAGAGGAAACTAAGCAGGATCAAAACAAATCTGCGGCAATGAGTTTGGTTGGCATTGGTGGAACAACGTTCATGTCACTTGGAATAGCTTTGGTCGCAGTGGCAACCAAGTGGAGTTGA | 852 | 0.4636 | MKQANLFSISLFLLFCSTTLAISPAPAAAPKAPAAKTPHTPNAAAPSPKPLVPTLPQSPDSPDSVPDDITRILKKAKMFSTLIRLLKTTEIMNNINSQLITAKSGGITILAPDDSAFSNLKAGFLNSLNEGQKIELVQFHILPEFVSTSNFDSLSNPVQTVAGKDPVRLPLNVNALGNSVNISTGVVNATILGVVYSDNKLGIYHVDKVLLPLDFFVTDKAPALAPSSLAKAPKDAKDNSSEDDQEETKQDQNKSAAMSLVGIGGTTFMSLGIALVAVATKWS | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst11g01377 | 283 | PANTHER | FASCICLIN-LIKE ARABINOGALACTAN PROTEIN | 7 | 261 | IPR045003 | - | |
| Spst11g01377 | 283 | ProSiteProfiles | FAS1/BIgH3 domain profile. | 66 | 210 | IPR000782 | - | |
| Spst11g01377 | 283 | Gene3D | FAS1 domain | 54 | 212 | IPR036378 | - | |
| Spst11g01377 | 283 | SMART | fasc_3 | 108 | 213 | IPR000782 | - | |
| Spst11g01377 | 283 | FunFam | Fasciclin-like arabinogalactan protein 11 | 54 | 212 | - | - | |
| Spst11g01377 | 283 | MobiDBLite | consensus disorder prediction | 235 | 251 | - | - | |
| Spst11g01377 | 283 | Pfam | Fasciclin domain | 78 | 212 | IPR000782 | - | |
| Spst11g01377 | 283 | SUPERFAMILY | FAS1 domain | 49 | 213 | IPR036378 | - | |
| Spst11g01377 | 283 | MobiDBLite | consensus disorder prediction | 29 | 67 | - | - | |
| Spst11g01377 | 283 | MobiDBLite | consensus disorder prediction | 43 | 60 | - | - | |
| Spst11g01377 | 283 | MobiDBLite | consensus disorder prediction | 228 | 256 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst11g01377 | Spst-Chr11 | 38221346 | 38222197 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst11g01377 | - | - | pvu:PHAVU_011G074500g | 447.973 |