Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0332 ATGCTCAAATCTGGTGTCCCATTTTACAGTGAAGTTTTTAAAGCAGTACCTTCCAGGTATGTTTCATTTGGTGGTGCAGCGCCTTACAGACCTGTCGAAGATGTTGCTTTTGCTGTGGCATGCTTTTTCCAGTGGGGTGGAACATTACAAAACTACTATATGATTTCTACTTTCCATGATCAATCTTCTTTTGATGGAAAAAGGGAATCTTCCATTTTTGTTGCATTTTTATTGTTGACATTTTGGACATTACATTTATACCACCAGCCGTCAGTTGAATGCAATCTTATGAATTCAAGGAGATACCCTAAGTGGGGCCACCTTAAATATGTGCATAACGCCATAAAGCTTTGTGAAGAAGCATTGATAGCCACTGATCCCAATATTACATCTCTTGGAACGGATCTAGAGGCTGCATTTTACAGCACAGGATCTTTATGTGCTGCCTTTCTTGCCAATGTGGGCACCACATCGGATGCAACAGTACATTTCAATGGCAATTCATATCACTTGCCTGCATGGTCCGTGAGCATCTTACCGGACTGCAAGAATGTAGTGCTGAACACTGCAAAGATTAATTCTGCAACTATGATTTCAAGCTTTGCAAGTGAATCATTAAAAGAAGCTATCGATTCTTTAGAAGGTTCTAGCTTGAGATGGAGCATTGATCTTAAAGATGGGGGTAGCACTCAAACTGTCCTCCACATTGAATCACTTGGTCATGCCCTTCATGCTTTTATCAATGGGAAGCCTGCAGGGAGTGGGACAGGAAACAGTAGCAACGCCAAGGTTGCCATGGACATTCCCATCACCCTTGCGGCTAGGAAAAACACAATTGATCTCCTGAGTTCAACTGTGGGACTTCAGAACTATGGAGCATTTTTTGACACATTGGGTGCTGGAATCACTGGTCCCGTAACATTGAAAGGTTTGAAAAATGGAAGCACTCTTGGTCTCTCCTCCCAGCTGTGGACATATCAGGGCTTAAGCGGAAAAAGTCTCTTTGCACCTGTTTGGTTCACCCAAATTTGGGTTAAGATAGGAAACCTGTGTTCACATGTGTCAGAATCTCACCCACCACCTGTAGACTCGTGGAATTCAGATACAGAATCAGGAAGAAAGCTAAGGCCTGTACTCTCACTTGAGTGCCCTTACCCTAATCAGCTCATCTCTTCCATTAAATTTGCAAGCTTTGGAACACCTCATGGAACATGTGGGAACTTCAACCATGGCCGCTGCAGTAGCAAATGTGCTCTCTCCATTCTACAGAAGGCTTGCATTGGATCAAGAAACTGTAGTATTGGAGTGTCAATTGATACATTCGGGGATCCATGCAGAGGCGTGACAAAGAGTTTAGCAGTTGAGGCTGCTTGTACATAG 1380 0.4326 MLKSGVPFYSEVFKAVPSRYVSFGGAAPYRPVEDVAFAVACFFQWGGTLQNYYMISTFHDQSSFDGKRESSIFVAFLLLTFWTLHLYHQPSVECNLMNSRRYPKWGHLKYVHNAIKLCEEALIATDPNITSLGTDLEAAFYSTGSLCAAFLANVGTTSDATVHFNGNSYHLPAWSVSILPDCKNVVLNTAKINSATMISSFASESLKEAIDSLEGSSLRWSIDLKDGGSTQTVLHIESLGHALHAFINGKPAGSGTGNSSNAKVAMDIPITLAARKNTIDLLSSTVGLQNYGAFFDTLGAGITGPVTLKGLKNGSTLGLSSQLWTYQGLSGKSLFAPVWFTQIWVKIGNLCSHVSESHPPPVDSWNSDTESGRKLRPVLSLECPYPNQLISSIKFASFGTPHGTCGNFNHGRCSSKCALSILQKACIGSRNCSIGVSIDTFGDPCRGVTKSLAVEAACT 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0332 459 Pfam Galactose binding lectin domain 381 458 IPR000922 GO:0030246
Glsi04g0332 459 Gene3D - 375 459 IPR043159 -
Glsi04g0332 459 CDD Gal_Rha_Lectin_BGal 376 458 - -
Glsi04g0332 459 Gene3D - 218 318 - -
Glsi04g0332 459 ProSiteProfiles SUEL-type lectin domain profile. 373 459 IPR000922 GO:0030246
Glsi04g0332 459 SUPERFAMILY Galactose-binding domain-like 176 311 IPR008979 -
Glsi04g0332 459 Pfam Beta-sandwich domain in beta galactosidase 122 192 IPR041392 -
Glsi04g0332 459 PANTHER BETA-GALACTOSIDASE RELATED 19 345 IPR001944 GO:0004553|GO:0005975
Glsi04g0332 459 FunFam Beta-galactosidase 369 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0332 Glsi-ChrGlsi04 2126296 2131788 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0332 20 333 Glycoside Hydrolase AT2G28470 52.500 1.11e-99 311