Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00278 ATGAGAACGACACAGATACTGTTCCTTTTCTTTTGGCTCATAGGCGTTCAAGCCTACACGTTGTTTTGCACCAATGTCACGTACGACCACCGTGCATTGGTCATCGACGGCAAGCGCCGTCTCTTCATCTCTGGTTCTATTCATTATCCTCGCAGTACTCCCGAGATGTGGCCGGACCTTATTCAGAAATCCAAAGATGGAGGACTCAATGCGATTGAAACCTACGTCTTCTGGAACAAGCACGAACCTGTGCGAGGCCAGTATAATTTTGAAGGCGGGAACGATCTAGTAAAATTTGTGAAGTTAGTAGGAGCAGCAGGCCTTCACGTGCATCTACGGATTGGCCCGTACGTATGCGCCGAATGGAACTATGGTGGTTTCCCTCTCTGGTTGCATTTTATACCTGGAATTCAGTTCCGTACTGATAATGAACCATTCAAGAGAGAAATGCAGCGATTTACTGCTAAAATTGTGGACTTGATGAAGAAAGAGAATCTCTATGCGTCTCAGGGAGGACCAATTATTTTATCTCAGATTGAAAATGAATATGGTAATGGGGACATTGAGCCTCGCTATGGTCCTGCTGCTAAACCTTACGTCAAGTGGGCAGCTTCAATGGCCATATCACTCAATACAGGAGTTCCCTGGGTCATGTGCCATCAAGCAGATGCTCCTGACCCCATTATTAACACTTGCAATGGATTTTACTGTGATCAATTCACACCAAACTCTAACCAGAAACCAACATTTTGGACTGAGAGTTATAGTGGATGGCTTGGATCATTTGGTGGTGCGGTTCCCTACAGACCTGTAGAAGATGTTGCATTTGCCGTGGCGCGGTTTTTCCAACGAGGTGGAACATTACAAAATTATTATATGTACCATGGTGGGACCAACTTTGGCCGAACCTCTGGCGGACCATTCATTTCTACAAGTTATGATTATGATGCACCAATCGATGAGTATGGAATTGTGAGACAGCCTAAGTGGGGACACCTCAAAGATGTGCATAAGGCCATAATGCTTTGTGAAGAAGCATTGCTAGCCACTGATCCCCAAATTAAATCACTTGGTCCGAATCTTGAGGCTGCAGTTTACCAGGCAGGATCTACATGTGCTGCCTTTCTTGCCAACATGGGCACCTCATCTGACGCAACAGTAAATTTCAATGGCAATTCCTATCACTTGCCGGCCTGGTCTGTGAGCATCTTACCAGACTGCGAGAATGTAGTGCTCAATACCGCAAAGGTTAATTCTCAAACTACCATTTCAAGCTTCACAAGAGAATTTTCCAAAGAAGACAGTAATTGTTTGAAGGGTTCTAGATCTGGATGGAGTTTGACAAGTGAACCAGTAGGCATTTCAAAAGCTGATGCATTCTCAAAAGTTGGACTATTGGAACAAATAAATACAACAGCAGACAGAAGTGACTACTTGTGGTACTCATTGAGCATTGATCTTGATGGTGAGGATGGCCTTCAAGCTGTCCTTCATATCGAATCACTTGGCCATGTCGTGCATGCATTTATCAATGGGAAGCTTGCAGGGAGTGGAGTTCGTGATGCTGCCAAAAAGTTGGACGTTCTTGTCACTCTTGTAGCTGGGAAGAACACAATTGATCTCCTGAGTCTAACCGTGGGCCTTCAGAACTATGGAGCCTTTTTTGACACATGGGGTGCTGGAATAACTGGCCCAGTTAAATTGAACGGTTTGAAAAATGGGAGCTCTCTGGATCTCTCCTCCCAGCAGTGGACATATCAGGTTGGTCTTAAGGGTGAAGAATTAGGTCTTTCTGATGGATCAGGAAAATGGAACTCGGAGTCTGCCCTACCTAAGAATCAACCATTGGTTTGGTACAAGACAAACTTTGCTGCTCCTTCTGGCATTAACCCAGTGGCAATTGACTTCACGGGTATGGGTAAAGGTGAGGCTTGGGTAAACGGACAGAGCATCGGTCGATTCTGGCCCACATATATTGCTCCAAAGAGTGGTTGCAATAAGGCATGCGATTACAGAGGGTCTTATATTTACAACAAATGTCTCAAAGATTGTGGAAAGCCATCACAATCGTTATACCATGTACCTCGCTCGTGGTTACGTCCAAGTGGTAACATACTTGTGTTGTTTGAGGAAAATGGAGGTGATCCAACCCAAATAACTTTTGCCACAAGACAGATAGAAAGCCTGTGTGCACATGTTTCAGATTCTCACCCACCACCTGTAGACTCATGGAATACAGACGCAGAATCAGGAAGAAAACTAGGGCCTGTACTTTCACTGGAGTGTCCTAATCCTGATCAGGTTATCTCTTCCATTAAATTTGCAAGCTTTGGATCTCCTCGTGGGACTTGTGGCAACTTCAACCATGGCCGATGCAGCAGCAAAAAAGCACTCTCTATTATACAGAAGGCCTGCGTTGGATCAAGAAGTTGCAATATTAGAGTGTCAATTGATACATTTGGTGATCCATGCGGAGGAGTGGCAAAGAGTTTGGCAGTTGAAGCTGCTTGTACACAATCACGCAGCTCCCACAATTCATTTGCCACAAATATCTAG 2556 0.448 MRTTQILFLFFWLIGVQAYTLFCTNVTYDHRALVIDGKRRLFISGSIHYPRSTPEMWPDLIQKSKDGGLNAIETYVFWNKHEPVRGQYNFEGGNDLVKFVKLVGAAGLHVHLRIGPYVCAEWNYGGFPLWLHFIPGIQFRTDNEPFKREMQRFTAKIVDLMKKENLYASQGGPIILSQIENEYGNGDIEPRYGPAAKPYVKWAASMAISLNTGVPWVMCHQADAPDPIINTCNGFYCDQFTPNSNQKPTFWTESYSGWLGSFGGAVPYRPVEDVAFAVARFFQRGGTLQNYYMYHGGTNFGRTSGGPFISTSYDYDAPIDEYGIVRQPKWGHLKDVHKAIMLCEEALLATDPQIKSLGPNLEAAVYQAGSTCAAFLANMGTSSDATVNFNGNSYHLPAWSVSILPDCENVVLNTAKVNSQTTISSFTREFSKEDSNCLKGSRSGWSLTSEPVGISKADAFSKVGLLEQINTTADRSDYLWYSLSIDLDGEDGLQAVLHIESLGHVVHAFINGKLAGSGVRDAAKKLDVLVTLVAGKNTIDLLSLTVGLQNYGAFFDTWGAGITGPVKLNGLKNGSSLDLSSQQWTYQVGLKGEELGLSDGSGKWNSESALPKNQPLVWYKTNFAAPSGINPVAIDFTGMGKGEAWVNGQSIGRFWPTYIAPKSGCNKACDYRGSYIYNKCLKDCGKPSQSLYHVPRSWLRPSGNILVLFEENGGDPTQITFATRQIESLCAHVSDSHPPPVDSWNTDAESGRKLGPVLSLECPNPDQVISSIKFASFGSPRGTCGNFNHGRCSSKKALSIIQKACVGSRSCNIRVSIDTFGDPCGGVAKSLAVEAACTQSRSSHNSFATNI 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00278 851 Gene3D Glycosidases 20 342 - -
Accr13g00278 851 Gene3D - 454 585 - -
Accr13g00278 851 ProSiteProfiles SUEL-type lectin domain profile. 752 838 IPR000922 GO:0030246
Accr13g00278 851 Pfam Glycosyl hydrolases family 35 33 339 IPR031330 -
Accr13g00278 851 FunFam Beta-galactosidase 22 343 - -
Accr13g00278 851 Gene3D - 753 844 IPR043159 -
Accr13g00278 851 CDD Gal_Rha_Lectin_BGal 755 837 - -
Accr13g00278 851 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Accr13g00278 851 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Accr13g00278 851 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Accr13g00278 851 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Accr13g00278 851 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Accr13g00278 851 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Accr13g00278 851 PRINTS Glycosyl hydrolase family 35 signature 614 628 IPR001944 GO:0004553|GO:0005975
Accr13g00278 851 PRINTS Glycosyl hydrolase family 35 signature 641 657 IPR001944 GO:0004553|GO:0005975
Accr13g00278 851 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Accr13g00278 851 Pfam Galactose binding lectin domain 760 837 IPR000922 GO:0030246
Accr13g00278 851 SUPERFAMILY Galactose-binding domain-like 401 570 IPR008979 -
Accr13g00278 851 Gene3D - 597 730 - -
Accr13g00278 851 SUPERFAMILY Galactose-binding domain-like 583 746 IPR008979 -
Accr13g00278 851 FunFam Beta-galactosidase 591 730 - -
Accr13g00278 851 FunFam Beta-galactosidase 292 419 - -
Accr13g00278 851 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Accr13g00278 851 PANTHER BETA-GALACTOSIDASE RELATED 20 751 IPR001944 GO:0004553|GO:0005975
Accr13g00278 851 SUPERFAMILY (Trans)glycosidases 25 344 IPR017853 -
Accr13g00278 851 Pfam Beta-sandwich domain in beta galactosidase 347 417 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00278 Accr-Chr13 2700043 2706552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00278 23 691 Glycoside Hydrolase AT2G28470 73.373 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00278 - - gmx:100804036 1397.88