Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01972 ATGATGAAAAAGCAACTTGTGTTGTCCTTCTCCATAGCAGTGCTGCTTTCATCTTTGTTTTTCACCACCACTTTAGCCCAGTTAGCACCAGCAGCTTCGCCTCTAAAACCACCACAACCTACCCCTACACCACCAGCTGAAGCTCCTAAACAACCATTGGTTCCCTCATTGCCACAGTCACCAAGTGATTCCACCCCTGACACTTCAGCTGTTGACATTGTTGGAATCCTGAGACAAGCCAAAGCATTCAACATCCTAATCAGACTCATGAAAACCACCCAATTGATCAACCAACTCAATGCACAACTCCTCACTACTAAATCAGGTGGCATCACCATTCTAGCACCTGATGACGGTTCCTTCTCCGAACTCAAACCAGGCTTCCTCAACTCTCTTTCTGATGGCCAAAAGCTCGAGCTCTTACAGTTCCACGTTATTTCAGAGTATGTGTCTAGCTCCAACTTTGATACTCTAACCAACCCTGTGAGAACACTTGCAGGAGCTAAACCTGGAAAGGTGGAACTGAATGTGATAAGTTACGGAGGGAGTGTGAACATCTCAACGGGTGAGGTTAACACCACCATCACTGGCATTGTATACACAGATAAGCATCTTGCTATTTACAAGGTGGGTAAGGTGCTTCTTCCTATGGACTTCTTTGCTGTGGCCAAGGCACCTGCAAAGGGACCATCTTTGGCACCAGAACCTTCAGCAAAGGCTCCTAAAGCGGATAAGGATCCATTATCCCCAGATTCCTCAGAATCATCTCAAACTAATCCCACCAGCAACAACTCTGGCTCTGAGAAAATCCATGTGCATGGAAAGTGGGTGTCCCTTGTTCTTGGACTAGTTGCTGTGACTGCATTGTCTTCGTAA 876 0.4635 MMKKQLVLSFSIAVLLSSLFFTTTLAQLAPAASPLKPPQPTPTPPAEAPKQPLVPSLPQSPSDSTPDTSAVDIVGILRQAKAFNILIRLMKTTQLINQLNAQLLTTKSGGITILAPDDGSFSELKPGFLNSLSDGQKLELLQFHVISEYVSSSNFDTLTNPVRTLAGAKPGKVELNVISYGGSVNISTGEVNTTITGIVYTDKHLAIYKVGKVLLPMDFFAVAKAPAKGPSLAPEPSAKAPKADKDPLSPDSSESSQTNPTSNNSGSEKIHVHGKWVSLVLGLVAVTALSS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01972 291 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 269 IPR045003 -
Viun11g01972 291 Gene3D FAS1 domain 55 216 IPR036378 -
Viun11g01972 291 MobiDBLite consensus disorder prediction 229 269 - -
Viun11g01972 291 SUPERFAMILY FAS1 domain 63 217 IPR036378 -
Viun11g01972 291 MobiDBLite consensus disorder prediction 250 269 - -
Viun11g01972 291 Pfam Fasciclin domain 82 216 IPR000782 -
Viun11g01972 291 FunFam Fasciclin-like arabinogalactan protein 11 56 216 - -
Viun11g01972 291 MobiDBLite consensus disorder prediction 33 56 - -
Viun11g01972 291 SMART fasc_3 112 217 IPR000782 -
Viun11g01972 291 ProSiteProfiles FAS1/BIgH3 domain profile. 70 214 IPR000782 -
Viun11g01972 291 MobiDBLite consensus disorder prediction 32 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01972 Viun-Chr11 35410794 35411922 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01972 - - gmx:100792674 421.009