Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01950 ATGAAACAAGCAACCCTTTTCTCCTTATCAGTGTTCCTACTCTTTTGGTCTACCACCTTGAGCATTTCACCAGCACCTGCAGCAGCTCCAAAAGCCCCAGCAGCAAAAACTCCCCATACCCCAAAGGCTGCAGCACCATCACCAAAACCATTAGTCCCCACATTACCTCAGTCTCCAGACTCCCCTGACTCTGTCCCTGATGACATCACCAGAATCCTCAAAAAGGCCAAAATGTTCTCAACCCTCATTCGCCTCCTCAAGACCACAGAAATCATCAACAACGTCAATTCACAGCTCATAACAGCCAAGACTGGGGGCATAACCATTCTTGCACCAGATGATTCTGCCTTTTCAAATCTCAAAGCTGGCTTCCTCAACTCCCTCAACGAAGGCCAGAAAATCGAACTTGTCCAGTTCCATATATTGCCAGAGTTTGTGTCAAGCTCAAACTTTGATTCTCTGAGCAACCCTGTGCAGACAGTAGCTGGTAAAGACCCTGTAAGGCTTCCATTGAACGTGAATGCATTAGGTAACAGTGTTAACATTTCAACTGGGGTCGTCAATGCCACCATTCTTGGAGTAGTATACTCTGATAACAAACTTGGGATTTATCACGTAGACAAGGTGCTTCTTCCTCTAGATTTCTTTGCAACCAGTAAGGCTCCAGCGTTGGCTCCTTCATCTCTTGCAAAGGCTCCCAAAGCTGCAAAGGAAAATTCTTCTGAGGATGATCAAGGCGAAACAAAGCAGGATCAGAATAAATCTGGGGCAGTGAGTTTGGTTGGCTTTGTTGGAACAACGTTGATGTCTCTTGGAATAGTTTTGGTCACAGTGGCAACCACGTGGAGTTGA 852 0.4601 MKQATLFSLSVFLLFWSTTLSISPAPAAAPKAPAAKTPHTPKAAAPSPKPLVPTLPQSPDSPDSVPDDITRILKKAKMFSTLIRLLKTTEIINNVNSQLITAKTGGITILAPDDSAFSNLKAGFLNSLNEGQKIELVQFHILPEFVSSSNFDSLSNPVQTVAGKDPVRLPLNVNALGNSVNISTGVVNATILGVVYSDNKLGIYHVDKVLLPLDFFATSKAPALAPSSLAKAPKAAKENSSEDDQGETKQDQNKSGAVSLVGFVGTTLMSLGIVLVTVATTWS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01950 283 ProSiteProfiles FAS1/BIgH3 domain profile. 66 210 IPR000782 -
Vimu5g01950 283 SUPERFAMILY FAS1 domain 49 213 IPR036378 -
Vimu5g01950 283 Gene3D FAS1 domain 54 212 IPR036378 -
Vimu5g01950 283 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 269 IPR045003 -
Vimu5g01950 283 SMART fasc_3 108 213 IPR000782 -
Vimu5g01950 283 MobiDBLite consensus disorder prediction 236 250 - -
Vimu5g01950 283 MobiDBLite consensus disorder prediction 228 253 - -
Vimu5g01950 283 MobiDBLite consensus disorder prediction 27 67 - -
Vimu5g01950 283 Pfam Fasciclin domain 78 212 IPR000782 -
Vimu5g01950 283 FunFam Fasciclin-like arabinogalactan protein 11 54 212 - -
Vimu5g01950 283 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01950 Vimu-Chr5 31369205 31370056 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01950 - - gmx:100793759 406.757