Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0173 ATGCTCTCTCGTTTAATTCCCAAACCCTCTCATTTCCGTCGCTTTCTCTCTATTCCGTTGAAACCGCACCACACGCCTTCGAATCCCTACTTCAGCGTCGTCGTTCCCAGACACTTCTCCACCAACCGGGGCGGCAGAGACGGCAATGGCAAGGACCCCTTCTCGACCCGCGTGTGGAATGATTTCCAGGAGACAGAGGAGAAGTTCGACGTGTTCTTCGAGGAGGAGAAGAGCGGGACCGGAATGAACGAGGACGGAAGCGGTGGGCGGAGAAGGGAGGAGCGAGGGTGGCTGCAGGAGGAGGAACAGGGGTGGTTGCAAGAGAAGGGTTTGGATAATGAAGATGAAGCTGCTATATTTAAAGGGATCGATGAGGAAAATGGTGACGCGGGAGCAGGAGAGGACTTCAAACCTTGGAGCTTGAAGGGGGAGGAGGAAGAGGAGAGCAAAGATGGTGTCTTTGATTTCCAAGAGGATGTGGTGGGGCATGAAGGGGACATGGCTGGTTTGGGTATTCAGCCTAAATTGGATGTTCAACAGCTTCAGAAGGAGGAGCAAGCTCTCACTGCTGTTGTCAATGGGCGCCAGAGTTTAGACCTCTATCAAGGCCCAAAACGTGCATTTGGTGATTTGATTGCTGCTTCTGGAATCACTGATGAAATGCTTGACAGTTTGATTGTGTTGAAAGACTTTGACGGGGTTGATGGGTTGCCCCCTCTTAGGGTAATTGAAGACATGAGGTATGAGAAGAATACTAGAAAATCCACCAGAGCTGAAATGGAGCGTCTGAAGCAAGAGGAAGCTGCAAAAGCTAGAGTGAAACAAGTGGATGAGAAAGGACGTGCTTATGGAACAGGAAGAAGAAAATGCAGTGTTGCCCGTGTCTGGGTTCAGCCTGGTAATGGTCAATTTGTAGTTAATGATAAAGAGTTTGATGTCTATTTTCCGATGCTTGAGCATCGTGCTACTCTCCTCCGACCTTTCTCTGAGACAAAGACTTTGGGGCTCTGGGACGTCGATTGTACTGTGAAAGGAGGTGGTGTTTCAGGGCAAGTTGGAGCTATAAGATTGGGGATCAGCAAGGCTTTGCAAAATTGGGAACCAGATTTGCGGCCTGCACTTAAAAGTGCTGGTTTCCTGACAAGGGACTCGCGGGTGGTAGAAAGGAAAAAGCCAGGAAAGGCCAAAGCAAGAAAAAGTTTCCAATGGGTCAAGCGTTGA 1221 0.4955 MLSRLIPKPSHFRRFLSIPLKPHHTPSNPYFSVVVPRHFSTNRGGRDGNGKDPFSTRVWNDFQETEEKFDVFFEEEKSGTGMNEDGSGGRRREERGWLQEEEQGWLQEKGLDNEDEAAIFKGIDEENGDAGAGEDFKPWSLKGEEEEESKDGVFDFQEDVVGHEGDMAGLGIQPKLDVQQLQKEEQALTAVVNGRQSLDLYQGPKRAFGDLIAASGITDEMLDSLIVLKDFDGVDGLPPLRVIEDMRYEKNTRKSTRAEMERLKQEEAAKARVKQVDEKGRAYGTGRRKCSVARVWVQPGNGQFVVNDKEFDVYFPMLEHRATLLRPFSETKTLGLWDVDCTVKGGGVSGQVGAIRLGISKALQNWEPDLRPALKSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0173 406 Coils Coil 246 266 - -
Aed5g0173 406 Hamap 30S ribosomal protein S9 [rpsI]. 277 406 IPR023035 -
Aed5g0173 406 Pfam Ribosomal protein S9/S16 286 406 IPR000754 GO:0003735|GO:0005840|GO:0006412
Aed5g0173 406 Gene3D - 253 406 IPR014721 -
Aed5g0173 406 PANTHER 28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL 62 406 - -
Aed5g0173 406 ProSitePatterns Ribosomal protein S9 signature. 345 363 IPR020574 GO:0003735|GO:0005840|GO:0006412
Aed5g0173 406 PANTHER RIBOSOMAL PROTEIN S9 62 406 IPR000754 GO:0003735|GO:0005840|GO:0006412
Aed5g0173 406 SUPERFAMILY Ribosomal protein S5 domain 2-like 281 406 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0173 Aed-Chr5 1239987 1242926 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0173 K02996 - gmx:100796918 632.098