Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01195 ATGAAACAAGCAACCCTTTTCTCCTTATCACTCTTCCTACTCTTTTGGTCTACCACCTTGGCCATTTCACCAGCACCTGCAGCAGCTCCAAAAGCCCCAGCAGCAAAAACTCCCCATACCCCAAAGGCTGCAGCACCATCACCAAAACCATTAGTCCCCACATTACCTCAGTCTCCAGACTCTCCTGACTCTGTCCCTGATGACATCACCAGAATCCTCAAAAAGGCCAAAATATTCTCAACCCTCATTCGTCTCCTTAAAACCACAGAAATCATCAACAACGTCAACTCACAGCTCATAACAGCCAAGACTGGAGGCATAACCATTCTTGCACCAGATGATTCTGCCTTTTCAAACCTCAAAGCTGGCTTCCTCAACTCCCTCAATGAAGGCCAGAAAATCGAACTTGTCCAATTCCACATATTGCCAGAGTATGTGTCAAGCTCAAACTTTGATTCTCTAAGCAATCCTGTGCAGACAGTGGCTGGTAAAGATCCTGTAAGGCTTCCACTGAACGTGAATGCATTAGGTAACAGTGTCAACATTTCAACTGGAGTTGTCAATGCCACCATTCTTGGAGTAGTATACTCTGATAACAAACTTGGGATTTATCACGTGGACAAGGTGCTTCTTCCTCTAGATTTCTTTGTAACCAACAAGGCTCCAGCTTTGGCTCCAACGTCTCTTGCAAAGGCTCCCAAAGCTGCTAAAGAAAACTCTTCTGATGACGATCAAGAAGAAACAAACCAGGATCACAATAAATCTGGGGCACTCAGTTTGAGCAGAACAAAGTTGATGTCATTTGGGATAGCCTTGGTCGCTATGGCAACCATGTGGAGTTGA 843 0.4508 MKQATLFSLSLFLLFWSTTLAISPAPAAAPKAPAAKTPHTPKAAAPSPKPLVPTLPQSPDSPDSVPDDITRILKKAKIFSTLIRLLKTTEIINNVNSQLITAKTGGITILAPDDSAFSNLKAGFLNSLNEGQKIELVQFHILPEYVSSSNFDSLSNPVQTVAGKDPVRLPLNVNALGNSVNISTGVVNATILGVVYSDNKLGIYHVDKVLLPLDFFVTNKAPALAPTSLAKAPKAAKENSSDDDQEETNQDHNKSGALSLSRTKLMSFGIALVAMATMWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01195 280 Gene3D FAS1 domain 54 212 IPR036378 -
Vian5g01195 280 MobiDBLite consensus disorder prediction 236 251 - -
Vian5g01195 280 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 263 IPR045003 -
Vian5g01195 280 MobiDBLite consensus disorder prediction 29 66 - -
Vian5g01195 280 SMART fasc_3 108 213 IPR000782 -
Vian5g01195 280 MobiDBLite consensus disorder prediction 229 256 - -
Vian5g01195 280 ProSiteProfiles FAS1/BIgH3 domain profile. 66 210 IPR000782 -
Vian5g01195 280 Pfam Fasciclin domain 79 212 IPR000782 -
Vian5g01195 280 FunFam Fasciclin-like arabinogalactan protein 11 54 212 - -
Vian5g01195 280 SUPERFAMILY FAS1 domain 49 213 IPR036378 -
Vian5g01195 280 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01195 Vian-Chr5 34448959 34449801 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01195 - - pvu:PHAVU_011G074500g 439.499