Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g1139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1140 . . . . Aev02g0217 . . . . . . Apr10g1259 . Bach6g01387 . Bva02g00941 Car07g02830 Cca11g00636 . Dod07g2026 . . Gma07g00558 Gma16g00260 Gso7g0531 Gso16g0236 Lal6g0667 Lal22g0603 . Lan11g0676 Lan9g0958 Lan2g0757 . Lasa4g00835 . . . . . Mal5g1209 Mepo1g03853 Mesa29g04466 . Mtr8g0856 Phac10g01383 . . Psa4g3681 Pste6g01898 Pumo7g00707 . Seca4g11398 Spst4g01919 Ssu4g2897 . . Trre15g01067 Tsu08g00980 . . . Viun10g02087 Vivi7g04328 .
Pvu10g1141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1143 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal18g1025 . . Lan2g0755 . . . . . . . . Mepo1g03854 Mesa29g04467 . Mtr8g0855 . Phco1g00640 . . Pste6g01896 . . . . . . . Trre15g01065 . . . . . Vivi7g04327 .
Pvu10g1144 . . . . . . . . . . . . . Bach6g01386 . Bva02g00942 Car07g02832 . . Dod07g2027 . . . . . . . . . . . . . . . . . . . . . . . . Phac10g01386 . . Psa4g3682 . . . . . Ssu4g2898 . . . . . . . . . .
Pvu10g1145 . . . Aed2g0589 Aev02g0216 . . . . . . Apr10g1258 . . . . . Cca11g00635 . . . . Gma07g00557 Gma16g00259 Gso7g0530 Gso16g0235 Lal6g0666 . . Lan11g0675 . . Lapu10g00207 Lasa4g00834 . . . . Lja3g1811 Mal5g1208 . . . . . Phco1g00639 . . . Pumo7g00706 Rops4g01586 Seca4g11399 . . . . . Tsu08g00977 Vian9g00580 . Vimu9g00167 Viun10g02099 . .
Pvu10g1146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst4g01922 . . . . . . . . . . .
Pvu10g1147 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1148 . . . Aed2g0588 Aev02g0215 . . . . . Amo02g0287 Apr10g1257 . . . . Car07g02833 Cca11g00633 . Dod07g2028 . . Gma07g00556 . Gso7g0529 Gso16g0234 Lal6g0665 . . Lan11g0674 . . Lapu10g00208 Lasa4g00833 . . . . Lja3g1810 Mal5g1207 Mepo1g03857 Mesa29g04471 . Mtr8g0852 Phac10g01390 . . Psa4g3683 Pste6g01892 . . . Spst4g01923 Ssu4g2900 . . Trre15g01064 Tsu08g00976 . . Vimu9g00164 . Vivi7g04325 .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g1139 Chr10 36989340 36991436 +
Pvu Pvu10g1140 Chr10 37003209 37005660 +
Aev Aev02g0217 Chr02 1611725 1613984 -
Apr Apr10g1259 Chr10 24960222 24964020 -
Bach Bach6g01387 Chr6 15268980 15271277 -
Bva Bva02g00941 Chr02 13413575 13416532 +
Car Car07g02830 Chr07 53884796 53887578 +
Cca Cca11g00636 Chr11 10394593 10397457 -
Dod Dod07g2026 Chr07 51110141 51112924 +
Gma Gma07g00558 Chr07 5401649 5404321 -
Gma Gma16g00260 Chr16 2775821 2778309 -
Gso Gso7g0531 Chr7 5387171 5389905 -
Gso Gso16g0236 Chr16 2743766 2746153 -
Lal Lal6g0667 Chr6 4389109 4391927 -
Lal Lal22g0603 Chr22 4241828 4244357 -
Lan Lan11g0676 Chr11 5692114 5694554 -
Lan Lan9g0958 Chr9 16101383 16104437 +
Lan Lan2g0757 Chr2 15978541 15981207 -
Lasa Lasa4g00835 Chr4 39015306 39017572 -
Mal Mal5g1209 Chr5 21477443 21480114 -
Mepo Mepo1g03853 Chr1 44866698 44869467 +
Mesa Mesa29g04466 Chr29 73650286 73652893 +
Mtr Mtr8g0856 Chr8 10519224 10522154 -
Phac Phac10g01383 Chr10 36734786 36737151 +
Psa Psa4g3681 Chr4 309537943 309540729 +
Pste Pste6g01898 Chr6 8765812 8768383 -
Pumo Pumo7g00707 Chr7 11668065 11670668 -
Seca Seca4g11398 Chr4 252921457 252924173 +
Spst Spst4g01919 Chr4 59839523 59841501 +
Ssu Ssu4g2897 Chr4 73992406 73994562 +
Trre Trre15g01067 Chr15 8298734 8301147 +
Tsu Tsu08g00980 Chr08 10753969 10756783 +
Viun Viun10g02087 Chr10 35791325 35793789 +
Vivi Vivi7g04328 Chr7 112918984 112921344 -
Pvu Pvu10g1141 Chr10 37006910 37009781 +
Pvu Pvu10g1142 Chr10 37021894 37022693 -
Pvu Pvu10g1143 Chr10 37024624 37029439 +
Lal Lal18g1025 Chr18 13243436 13248871 -
Lan Lan2g0755 Chr2 15965852 15970452 +
Mepo Mepo1g03854 Chr1 44872158 44876624 -
Mesa Mesa29g04467 Chr29 73655022 73658750 -
Mtr Mtr8g0855 Chr8 10513564 10517581 +
Phco Phco1g00640 Chr1 5807452 5810081 -
Pste Pste6g01896 Chr6 8747442 8753419 +
Trre Trre15g01065 Chr15 8286152 8291818 +
Vivi Vivi7g04327 Chr7 112914136 112917585 +
Pvu Pvu10g1144 Chr10 37058735 37063255 +
Bach Bach6g01386 Chr6 15262390 15267985 +
Bva Bva02g00942 Chr02 13417207 13423342 -
Car Car07g02832 Chr07 53893186 53898318 -
Dod Dod07g2027 Chr07 51114077 51118493 -
Phac Phac10g01386 Chr10 36758266 36758940 +
Psa Psa4g3682 Chr4 309541964 309544564 -
Ssu Ssu4g2898 Chr4 74014338 74015806 -
Pvu Pvu10g1145 Chr10 37080347 37081365 +
Aed Aed2g0589 Chr2 4270963 4274722 +
Aev Aev02g0216 Chr02 1607908 1610773 +
Apr Apr10g1258 Chr10 24956095 24960222 +
Cca Cca11g00635 Chr11 10386321 10392197 +
Gma Gma07g00557 Chr07 5393113 5399843 +
Gma Gma16g00259 Chr16 2769483 2775554 +
Gso Gso7g0530 Chr7 5378581 5385365 +
Gso Gso16g0235 Chr16 2737339 2743377 +
Lal Lal6g0666 Chr6 4383922 4388684 +
Lan Lan11g0675 Chr11 5687074 5691132 +
Lapu Lapu10g00207 Chr10 3992564 3998107 -
Lasa Lasa4g00834 Chr4 39008810 39012159 +
Lja Lja3g1811 Chr3 20501758 20509808 +
Mal Mal5g1208 Chr5 21470647 21475695 +
Phco Phco1g00639 Chr1 5799281 5803718 +
Pumo Pumo7g00706 Chr7 11621619 11655907 +
Rops Rops4g01586 Chr4 39078063 39084231 -
Seca Seca4g11399 Chr4 252925680 252937414 -
Tsu Tsu08g00977 Chr08 10735736 10741459 +
Vian Vian9g00580 Chr9 6786001 6793513 +
Vimu Vimu9g00167 Chr9 2006415 2016203 +
Viun Viun10g02099 Chr10 35815930 35820712 -
Pvu Pvu10g1146 Chr10 37087137 37088087 +
Spst Spst4g01922 Chr4 59893153 59898707 -
Pvu Pvu10g1147 Chr10 37151403 37152987 +
Pvu Pvu10g1148 Chr10 37255554 37260106 +
Aed Aed2g0588 Chr2 4267066 4270280 -
Aev Aev02g0215 Chr02 1603658 1606584 -
Amo Amo02g0287 Chr02 3656241 3659309 -
Apr Apr10g1257 Chr10 24950888 24954750 -
Car Car07g02833 Chr07 53905212 53909707 +
Cca Cca11g00633 Chr11 10364463 10368590 -
Dod Dod07g2028 Chr07 51121248 51125818 +
Gma Gma07g00556 Chr07 5386553 5390540 -
Gso Gso7g0529 Chr7 5372014 5376086 -
Gso Gso16g0234 Chr16 2735927 2737029 -
Lal Lal6g0665 Chr6 4379451 4385098 -
Lan Lan11g0674 Chr11 5681764 5686597 -
Lapu Lapu10g00208 Chr10 4004475 4008991 +
Lasa Lasa4g00833 Chr4 38922453 38925281 -
Lja Lja3g1810 Chr3 20491806 20495384 -
Mal Mal5g1207 Chr5 21465423 21469655 -
Mepo Mepo1g03857 Chr1 44910464 44914944 +
Mesa Mesa29g04471 Chr29 73676982 73682327 +
Mtr Mtr8g0852 Chr8 10492941 10497766 -
Phac Phac10g01390 Chr10 36992817 36997554 +
Psa Psa4g3683 Chr4 309666008 309668948 +
Pste Pste6g01892 Chr6 8733123 8736631 -
Spst Spst4g01923 Chr4 59899447 59907151 +
Ssu Ssu4g2900 Chr4 74063567 74154052 +
Trre Trre15g01064 Chr15 8280009 8284126 -
Tsu Tsu08g00976 Chr08 10728752 10732755 -
Vimu Vimu9g00164 Chr9 1941191 1945498 -
Vivi Vivi7g04325 Chr7 112899181 112902379 -