Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2900 ATgtcagaggagaagaagagcACGAGAAGGAGCGTTGTTGTGGTGCGCAAAAGGGCACATCCTTCGGCTGAAGTGGAAGACATAGAGGACACACTGTCCTTCTCCAAAGACGAGATTCACAAACTGAGAGTGGCTCTATTGGACTGGTACGACCTCAACCGCAGGGaccttccttggagaaccacaaaagaagaagaagttgaaaGAAGAGCTTATGGGGTGTGGGTCTCGGAGGTTATGCTGCAGCAAACCAGGGTTCAGACTGTTATTGCCTATTACAACCGTTGGATGCAAAAATGGCCAACCATTCACCTTCTTGCACAAGCTTCTCTCGAGGAAGTAAATGAGATGTGGGCAGGTTTGGGCTACTACCGAAGAGCTCGTTTTCTTTTAGAGGGGGCAAAGAAAATAGTTGCAGAAGGAGGCAAAATTCCTAAAGTGGCTTCTATGCTACGAAAGATTCCTGGAATTGGAGACTACACATCTGGAGCAATTGCTTCTATTGCATTCAAAGAGGTGGTACCTGTTGTTGATGGAAATGTGGTAAGGGTGATTGCTAGACTAAGGGCTGTGTCTGCAAATCCAAAAGACTCAGCAACCGTTAAGAGATTTTGGAAATTAGCAGCTCAGTTGGTTGATCCTGTTTGTCCTGGGGACTTCAATCAGGCTCTCATGGAACTTGGGGCAACTGTATGCACCCCTTTGAACCCGAGCTGTTCCTCATGTCCAGCATCAGAATTTtgtcatgcactatcaatggCTAAACGTGATAGTACAGCAGCAGTTACAGATTATCCTGTTAAGGGTGTGAAGGTTAAACAGAGATGTGATTTTTCTGCTGTATGTGTTGTTGAATTAGTTGGAGCTGAAACATTGTTAGATAAAAACCAGTCTGGCAGCAAGTTTATTCTTGTCAAAAGGCCAGAAGAAGGATTGCTTGCTGGTCTCTGGGAGTTTCCATCTGCCCCACTGGATGGAGAAACAGTTCCATTGGCTAGAAGAGAAGCAATGGATCACTTCTTgaaaagaaatctcaaaattgaCATTAGAAAGACTTGTAATATAGTTTTGAGGGAAGATATTGGGGAATTTGTTCATATTTTCAGCCACATACGCCTCAAGTTGTATGTTGAATTGCTAGTGTTACAATTGAAAGGAGGAGTAGATGATTTGTTCAAAAGCCAGGACAATAAAACTACAACTTGGAAATGTGTTTACAGCAATGCACTTTCAAGTATGGGACTGACGACCAGTGTAAGAAAGGTGTACAACATGGTTCAAAACTTTAAGCAGAAAAGTCTTCCTTCTAACCATGTTCCAACCAAAAAGAGAACTAGAACGACCAAGAGACTAGCCTAG 1359 0.404 MSEEKKSTRRSVVVVRKRAHPSAEVEDIEDTLSFSKDEIHKLRVALLDWYDLNRRDLPWRTTKEEEVERRAYGVWVSEVMLQQTRVQTVIAYYNRWMQKWPTIHLLAQASLEEVNEMWAGLGYYRRARFLLEGAKKIVAEGGKIPKVASMLRKIPGIGDYTSGAIASIAFKEVVPVVDGNVVRVIARLRAVSANPKDSATVKRFWKLAAQLVDPVCPGDFNQALMELGATVCTPLNPSCSSCPASEFCHALSMAKRDSTAAVTDYPVKGVKVKQRCDFSAVCVVELVGAETLLDKNQSGSKFILVKRPEEGLLAGLWEFPSAPLDGETVPLARREAMDHFLKRNLKIDIRKTCNIVLREDIGEFVHIFSHIRLKLYVELLVLQLKGGVDDLFKSQDNKTTTWKCVYSNALSSMGLTTSVRKVYNMVQNFKQKSLPSNHVPTKKRTRTTKRLA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2900 452 SMART endo3end 80 230 IPR003265 GO:0006284
Ssu4g2900 452 SUPERFAMILY DNA-glycosylase 39 251 IPR011257 GO:0003824|GO:0006281
Ssu4g2900 452 Pfam NUDIX domain 300 423 IPR029119 -
Ssu4g2900 452 CDD DNA_Glycosylase_C 301 426 IPR029119 -
Ssu4g2900 452 Gene3D - 41 250 IPR023170 -
Ssu4g2900 452 PANTHER ADENINE DNA GLYCOSYLASE 25 446 IPR044298 GO:0006284|GO:0016798
Ssu4g2900 452 CDD ENDO3c 72 228 IPR003265 GO:0006284
Ssu4g2900 452 Pfam HhH-GPD superfamily base excision DNA repair protein 76 208 IPR003265 GO:0006284
Ssu4g2900 452 Gene3D Hypothetical protein; domain 2 56 175 - -
Ssu4g2900 452 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 271 433 - -
Ssu4g2900 452 SUPERFAMILY Nudix 266 426 IPR015797 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2900 K03575 - gmx:100818278 765.377