Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0287 ATGCCAACAACATTGGATAGAGCTGTTAACCCACTTCTGAGTTCTGCATCACAACTGTTTGTTAAAATGTCTCAGAGGAACAACATGGCCAAGGCCACTGTTATTAGGGTCAGCAACAGAAAAAGGAAACAAACTTTGGTGGAAGAACACCTTCAACTACAAGACATAGAGGATTCAGCACCTTCTTCTTGCTCCTCCTCATTCACCAAAGATGAGATTCACAAACTGAGGCTAGCCTTGTTGGAATGGTATGACAACAACCACAGGGATCTCCCATGGAGAACTTCCAAGAATGCTTCCAATGGCAATGATGATGAAGAAGAAGATGAAGAGGTGCAAAGGAGGGCTTATGGTGTGTGGGTTTCTGAGGTGATGCTTCAACAAACAAGGGTTCAGACTGTTATTGCTTATTACAACCGTTGGATGAAGAAATGGCCCACTATTCATCATCTAGCTCAAGCTTCTCTTGAGGAAGTAAATGAAATGTGGGCAGGTTTGGGCTACTATCGAAGAGCTCGTTTTCTTTTTGAGGGTGCGAAGAAAATCGTTGCAGAAGGAGGAAGGATTCCTAAAATGGCTTCTATGCTACAAAAGATTCCTGGAATTGGGGAGTATACAGCCGGAGCAATTGCCTCTATAGCATTCAACGAGGCAGTACCTGTTGTTGATGGGAACGTCGTAAGGGTGATTGCTAGATTAAGGGCCGTTTCTGCTAATCCAAAAGATTCAGCAACTGTTAGGAGATTTTGGAAAGTAGCAGCTCAGTTGGTCGATCCTCTCCGACCAGGGGACCTCAATCAATCCCTGATGGAACTTGGGGCAACCGTGTGCACGCCTTTGAATCCGAGCTGCTCATCATGTCCAGTATCAGAATTTTGTAAAGCATTGTCAATTTCTAAAGAAGATACTTCCGTAGTGGTAACAGATTATCCTGTAAAGGGCACGAAGGTTAAACAAAGATGCGACTTTAGTGCTGTATGTGTTGTTGAGTTACTTGGAGCTGATACAATCTCAGACGAAAAACAGTCGACAAGCAAATTTATTCTTGTAAAAAGGCCTGATGAAGGATTGCTTGCCGGTCTCTGGGAGTTTCCATCTGCCTCTTTGGATGGCGAAACTGCTTCATTGGCTAGAAGAGAGGCAACGAATTCCTTCTTGAAAAATGTTCTCAAAATTGACACCAAAAGCAAAAGGACTTGCAATATTGTTTTGAGGGAAGATGTTGGGGAATTTGTTCACATTTTCAGTCACATTCGCCTCAAGTTGTATGTCGAATTACTAGTGTTGCAATTGAAAGGGAAAGTAGAAGATTTGTTGAGTAGCCATGGAAATGAAACTACAAATTGGAAATGCGTTGACGGCAATTCGCTTTCAAGTATGGGACTAACAACCAGTGTATACAACTTGGTTCAAAAGTTCAAGCAGAAAAGTTTTCCTTCCCATGTGCCTGCTAAAAAGAGAAGTAGAACAACCAGAAGAAACATAGTCTAG 1491 0.4245 MPTTLDRAVNPLLSSASQLFVKMSQRNNMAKATVIRVSNRKRKQTLVEEHLQLQDIEDSAPSSCSSSFTKDEIHKLRLALLEWYDNNHRDLPWRTSKNASNGNDDEEEDEEVQRRAYGVWVSEVMLQQTRVQTVIAYYNRWMKKWPTIHHLAQASLEEVNEMWAGLGYYRRARFLFEGAKKIVAEGGRIPKMASMLQKIPGIGEYTAGAIASIAFNEAVPVVDGNVVRVIARLRAVSANPKDSATVRRFWKVAAQLVDPLRPGDLNQSLMELGATVCTPLNPSCSSCPVSEFCKALSISKEDTSVVVTDYPVKGTKVKQRCDFSAVCVVELLGADTISDEKQSTSKFILVKRPDEGLLAGLWEFPSASLDGETASLARREATNSFLKNVLKIDTKSKRTCNIVLREDVGEFVHIFSHIRLKLYVELLVLQLKGKVEDLLSSHGNETTNWKCVDGNSLSSMGLTTSVYNLVQKFKQKSFPSHVPAKKRSRTTRRNIV* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0287 496 SUPERFAMILY Nudix 345 474 IPR015797 -
Amo02g0287 496 CDD ENDO3c 117 273 IPR003265 GO:0006284
Amo02g0287 496 Pfam NUDIX domain 345 468 IPR029119 -
Amo02g0287 496 Gene3D Hypothetical protein; domain 2 90 220 - -
Amo02g0287 496 PANTHER ADENINE DNA GLYCOSYLASE 40 481 IPR044298 GO:0006284|GO:0016798
Amo02g0287 496 Pfam HhH-GPD superfamily base excision DNA repair protein 121 253 IPR003265 GO:0006284
Amo02g0287 496 SUPERFAMILY DNA-glycosylase 74 296 IPR011257 GO:0003824|GO:0006281
Amo02g0287 496 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 316 478 - -
Amo02g0287 496 Gene3D - 76 295 IPR023170 -
Amo02g0287 496 ProSitePatterns Endonuclease III family signature. 187 216 IPR004036 -
Amo02g0287 496 CDD DNA_Glycosylase_C 346 429 IPR029119 -
Amo02g0287 496 SMART endo3end 125 275 IPR003265 GO:0006284
Amo02g0287 496 SMART ccc3 276 296 IPR003651 GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0287 Amo-Chr2 3656241 3659309 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0287 K03575 - gmx:100818278 677.167