Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11399 ATGGAGGTGGGGTTCTTGGGTTTGGGGATAATGGGCAAGGCTATGGCAATGAACCTGCTACGCCATGGCTACAAGGTCACTGTTTGGAACAGGACACGCTCCAAGTGTGATGAACTCGTGGAACATGGTGCTTCAGTTGGAGAAACCCCTGCAGCTGTAGTCAAGAAATGCAAGTATACAATTGCAATGTTATCTGATCCTTCAGCTGCTTTATCGGTTGTATTTGATAAAAATGGTGTTCTTGAGCAAATTAATGGAAAAGGTTATATTGACATGTCAACGGTTGATTCTGATACATCTATCAAGATATCTGAGGCAATCAAAGCAAAAGGTGGTAACTTCATTGAAGCTCCTGTTTCGGGTAGCAAGAAGCCTGCAGAAGATGGTCAACTAGTAATACTTGCTGCTGGGGATGAGGCATTGTATGTGGAAGCACTTCCAGCATTTGATATACTTGGGAAGAAGTCTTTCTTTCTGGGTGAGGTTGGAAATGGTGCAAAAATGAAACTTGTTGTTAACATGATAATGGGCAGTATGATGAATGCTTTCTCTGAGGGACTCACACTGGCTGAAAGAAGTGGCTTGAACCCTGGAACTCTTCTTGATGTGCTGGATCTTGCTGCCATAAGTAACGCCATGTTTAAATTGAAAGGGCCCACAATGCTCAAAAACAGTTACTCCCCAGCTTTTCCACTGAAACATCAGCAGAAGGACATGAGATTGGCTCTTGCCCTTGGAGATGAAAATGCTGTACCAATGCCTGTAGCAGCTGCAGCAAATGAGGCATTCAAGAAAGCTAGAAGCTTGGGGTTGGGAGACCTTGATTTTTCAGCTGTCCATGAGACTTTGAAAGCTCTTGATCATTCATCTTGA 873 0.4364 MEVGFLGLGIMGKAMAMNLLRHGYKVTVWNRTRSKCDELVEHGASVGETPAAVVKKCKYTIAMLSDPSAALSVVFDKNGVLEQINGKGYIDMSTVDSDTSIKISEAIKAKGGNFIEAPVSGSKKPAEDGQLVILAAGDEALYVEALPAFDILGKKSFFLGEVGNGAKMKLVVNMIMGSMMNAFSEGLTLAERSGLNPGTLLDVLDLAAISNAMFKLKGPTMLKNSYSPAFPLKHQQKDMRLALALGDENAVPMPVAAAANEAFKKARSLGLGDLDFSAVHETLKALDHSS. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11399 290 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 3 157 IPR006115 GO:0050661
Seca4g11399 290 Gene3D - 1 162 - -
Seca4g11399 290 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 163 281 IPR029154 GO:0051287
Seca4g11399 290 FunFam Putative oxidoreductase GLYR1 homolog 1 162 - -
Seca4g11399 290 FunFam Glyoxylate/succinic semialdehyde reductase 2 163 287 - -
Seca4g11399 290 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 5 18 IPR002204 GO:0016491
Seca4g11399 290 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 161 285 IPR008927 -
Seca4g11399 290 Gene3D - 163 285 IPR013328 GO:0016491
Seca4g11399 290 PANTHER OXIDOREDUCTASE GLYR1-RELATED 2 283 - -
Seca4g11399 290 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 161 IPR036291 -
Seca4g11399 290 PIRSF HIBADH 1 290 IPR015815 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11399 Seca-Chr4 252925680 252937414 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11399 K18121 - gmx:100802847 508.064