Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01064 ATGTCAGAGAAGAATCAAAACAAGAACAAGAACACAAGGAGTAACGTTGATGGGGTCAGCAAAAAGACACGAACTTTGGTGAAAACAGAAGACATAGAAGATGCAGTGTCCTTCTTCTCCAAAGATGAAACCCACAAACTTAGAACAGTTCTATTGGATTGGTATGATAACAACCATAGGGTTCTTCCTTGGAGAACCACCTTGAATCATAATCATGAAGAAGAAGAAGTTGAAAAGAGGGCTTATGGTGTTTGGGTTTCTGAGGTTATGTTACAGCAAACAAGGGTTCAGACTGTTATTGCTTATTATAACCGTTGGATGCTTAAATGGCCTACCATTCATCATCTAGCTAAGGCTTCTCTTGAGGAAGTGAATGAGATTTGGGCTGGTTTGGGTTACTATCGGAGAGCTCGTTTTCTTTTAGAGGGGGCAAAGAAAATAGTTGCAGAAGGAGGAAGTATTCCTAAAACAGCTTCCATGCTACGAAAGATTCCTGGAATCGGAGACTATACATCTGGAGCAATTGCCTCTATAGCGTTCAAAGAGGCGGTACCCGTTGTTGACGGAAATGTGATAAGGGTAATTGCGAGACTAAGGGCTGTTACTGAAAATCCGAAAGACTCGGCAATCATTAAGAGATTTTGGGAAATAGCAGCTCAGTTGGTTGATCCGCTTCGTCCTGGTGACTTCAATCAGGCTCTCATGGAACTTGGTGCAACTGTATGTACCCCTTTGAACCCTAGCTGTTCATTGTGTCCAGCAACAGAATTTTGTCATGCGCTATCAATCGCTAAACGTGATAGTACAGCAGCGGTTACGGATTATCCTGTTAAGGGCGTGAAGGTTAAACAAAGATCCGATTTTTGTGCTGTATGTGTTGTTGAATTAGTTGGACGTGAAACATCGTTAGATGAGAACCATTCTAGCAGCAAATTTGTTCTGGTAAAAAGGCCCGATGGAGGATTGCTTGCCGGTCTATGGGAGTTTCCGTCTGTCTTAATAGACGAAGAAACTACTCCACTAGCTAGAAGAAAAGCAACTGATTGCTTCTTGAAAAAAAATCTCAAAATTGACATAAAAAAGACTTGCAATGTTGTTTCGAGGGAAGATGTCGGAGAATTTGTTCATATATTTAGTCACATTCGCCTCAAGTTGTTTGTTGAATTGCTTGTTTTACAATTGAAAGGGAAAGTAGATGATTTGGTCAAAAGCGAGGACGATGAAACTAAAACTTGGAAATGTGTTGACAGTGATGCCCTCTCGAGTATGGGACTGACGACCAGTGTAAGAAAGGTGTACGACATGGTTCAGAAATTTAAGAAGAAAAGAGTTCCATCTAACCATGTATCAACCAAAAAGAGAAATAGAACAACCAAGAAAAACTAG 1386 0.4069 MSEKNQNKNKNTRSNVDGVSKKTRTLVKTEDIEDAVSFFSKDETHKLRTVLLDWYDNNHRVLPWRTTLNHNHEEEEVEKRAYGVWVSEVMLQQTRVQTVIAYYNRWMLKWPTIHHLAKASLEEVNEIWAGLGYYRRARFLLEGAKKIVAEGGSIPKTASMLRKIPGIGDYTSGAIASIAFKEAVPVVDGNVIRVIARLRAVTENPKDSAIIKRFWEIAAQLVDPLRPGDFNQALMELGATVCTPLNPSCSLCPATEFCHALSIAKRDSTAAVTDYPVKGVKVKQRSDFCAVCVVELVGRETSLDENHSSSKFVLVKRPDGGLLAGLWEFPSVLIDEETTPLARRKATDCFLKKNLKIDIKKTCNVVSREDVGEFVHIFSHIRLKLFVELLVLQLKGKVDDLVKSEDDETKTWKCVDSDALSSMGLTTSVRKVYDMVQKFKKKRVPSNHVSTKKRNRTTKKN 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01064 461 SMART endo3end 90 240 IPR003265 GO:0006284
Trre15g01064 461 SUPERFAMILY Nudix 276 437 IPR015797 -
Trre15g01064 461 Pfam NUDIX domain 310 434 IPR029119 -
Trre15g01064 461 SUPERFAMILY DNA-glycosylase 45 261 IPR011257 GO:0003824|GO:0006281
Trre15g01064 461 Gene3D - 46 260 IPR023170 -
Trre15g01064 461 FunFam Adenine DNA glycosylase 179 261 - -
Trre15g01064 461 FunFam Adenine DNA glycosylase 281 442 - -
Trre15g01064 461 CDD ENDO3c 82 238 IPR003265 GO:0006284
Trre15g01064 461 PANTHER ADENINE DNA GLYCOSYLASE 6 452 IPR044298 GO:0006284|GO:0016798
Trre15g01064 461 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 281 444 - -
Trre15g01064 461 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g01064 461 MobiDBLite consensus disorder prediction 7 21 - -
Trre15g01064 461 FunFam Adenine DNA glycosylase 61 185 - -
Trre15g01064 461 Gene3D Hypothetical protein; domain 2 61 185 - -
Trre15g01064 461 Pfam HhH-GPD superfamily base excision DNA repair protein 86 218 IPR003265 GO:0006284
Trre15g01064 461 CDD DNA_Glycosylase_C 288 436 IPR029119 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01064 Trre-Chr15 8280009 8284126 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01064 K03575 - gmx:100818278 698.353