Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00976 ATGTCAGAGAAGAatcaaaacaagaacaagaacacaAGGAGTAACATTAATGGGGTCAGCAAAAAGACACGAACTTTGGTGAAAACAGAAGACATAGAAGATGCAGTGTCATTCTTCTCCAAAGATGAAACCCACAAACTTAGAGCAGTTTTATTGGATTGGTATGATAACAACCATAGGGTTCTTCCTTGGAGAACCACCTTGAATGATAatcatgaagaagaagaagttgaaaaaaGGGCTTATGGTGTTTGGGTTTCTGAGGTTATGTTACAGCAAACAAGGGTTCAGACTGTTATTGCTTATTATAACCGTTGGATGCTTCAATGGCCTACTATTCATCATCTAGCAAAGGCTTCTCTTGAGGAAGTGAATGAGATTTGGGCTGGTTTGGGTTACTATCGGAGAGCTCGTTTTCTTTTAGAGGGGGCAAAGAAAATAGTTGCAGAAGGAGGAAGTATTCCTAAAACAGCTTCAATGCTTCGAAAGATTCCTGGCATCGGAGACTATACATCTGGAGCAATTGCCTCTATAGCATTCAAAGAGGCGGTACCTGTTGTTGATGGAAATGTGATAAGGGTGATTGCGAGACTAAAGGCTGTTACTGAAAATCCGAAAGACTCGGCAATCATTAAGAGATTTTGGGAAATAGCAGCTCAGTTGGTTGATCCGCTTCGTCCTGGAGACTTCAACCAGGCTCTCATGGAACTTGGTGCAACTGTATGCACCCCTTTGAACCCAAGTTGTTCGTCATGTCCAGCAACAGAATTTTGTCATGCACTATCAATTGCTAAACGTGATAGTACAGCAGCGGTTACGGATTATCCTGTTAAGGGCGTGAAGGTTAAACAAAGATCCGATTTTTGTGCTGTATGTGTTGTTGAATTACTTGGACGTGAAACATCGTTAGATGAGAACCATTCTAGCAGCAAATTTGTTCTCGTAAAAAGGCCCGATGGAGGATTGCTTGCCGGTCTATGGGAATTTCCGTCTGTCTTAATAGACGAAAAAACTACTCCACTAGCTAGAAGAAAAGCAACCGATTGcttcttgaaaaaaaatctcaaaattgaCATAAAAAAGACTTGCGATGTTGTTTCGAGGGAAGATGTCGGAGAATTTGTTCATATATTTAGTCACATTCGCCTCAAGTTGTATGTTGAGTTGCTAGTATTACAATTGAAAGGTAAAGTAGATGATTTGGTCAAAAGCGAGCATGATGAAACTATAACTTGGAAATGTGTTGACAGTGATGCCCTCTCGAGTATGGGACTGACGACCAGTGTAAGAAAGGTAGTGTACGACATGGTTCAAAAATTTACGAAGAAAAGAGTTCCCTCTAACCATGTACCAACCAAAAAGAGAAATAGAACAACCAAGAAAAACTAG 1389 0.388 MSEKNQNKNKNTRSNINGVSKKTRTLVKTEDIEDAVSFFSKDETHKLRAVLLDWYDNNHRVLPWRTTLNDNHEEEEVEKRAYGVWVSEVMLQQTRVQTVIAYYNRWMLQWPTIHHLAKASLEEVNEIWAGLGYYRRARFLLEGAKKIVAEGGSIPKTASMLRKIPGIGDYTSGAIASIAFKEAVPVVDGNVIRVIARLKAVTENPKDSAIIKRFWEIAAQLVDPLRPGDFNQALMELGATVCTPLNPSCSSCPATEFCHALSIAKRDSTAAVTDYPVKGVKVKQRSDFCAVCVVELLGRETSLDENHSSSKFVLVKRPDGGLLAGLWEFPSVLIDEKTTPLARRKATDCFLKKNLKIDIKKTCDVVSREDVGEFVHIFSHIRLKLYVELLVLQLKGKVDDLVKSEHDETITWKCVDSDALSSMGLTTSVRKVVYDMVQKFTKKRVPSNHVPTKKRNRTTKKN 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00976 462 PANTHER ADENINE DNA GLYCOSYLASE 6 460 IPR044298 GO:0006284|GO:0016798
Tsu08g00976 462 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 281 443 - -
Tsu08g00976 462 CDD ENDO3c 82 238 IPR003265 GO:0006284
Tsu08g00976 462 Gene3D Hypothetical protein; domain 2 61 185 - -
Tsu08g00976 462 SMART endo3end 90 240 IPR003265 GO:0006284
Tsu08g00976 462 CDD DNA_Glycosylase_C 311 433 IPR029119 -
Tsu08g00976 462 Pfam NUDIX domain 310 433 IPR029119 -
Tsu08g00976 462 Pfam HhH-GPD superfamily base excision DNA repair protein 86 218 IPR003265 GO:0006284
Tsu08g00976 462 Gene3D - 46 260 IPR023170 -
Tsu08g00976 462 SUPERFAMILY Nudix 276 433 IPR015797 -
Tsu08g00976 462 SUPERFAMILY DNA-glycosylase 45 261 IPR011257 GO:0003824|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00976 Tsu-Chr8 10728752 10732755 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00976 K03575 - gmx:100818278 687.567