Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01923 ATGCCAGCTTTAGAAAATAAGCCTAACCTTAAGTTTGATCTTATCTTAGAAATGCTTTTGTCTGGGCTTGGCCACAATAAGAAAAAGTGGAAGATGGAGCGGCAACAACAAGATGTTTGTCTGGGTATGGAGGGTGATGTTAACTTTCAAGAACCAGAAGGTTCCGACATGTCAGAGAAGAAGAAGAATATGCGCAGAATGAGCAATGGTGGGGCGAGCAAAAAGCCGCAGCCTTTGGTGGAAGTGGAAGACATTGAGGACGGGATATCATTCTCCAGAGACGAGACTCAAAAACTCAGAGTGGCCCTTTTGGACTGGTACGACCTCAACCACAGGGACCTTCCTTGGAGAACACATCACCGTGAAAGTGAAGAAAAACAAGAAGAAGAAGAAGAAGAAGAAGTGGAAAGAAGAGCTTATGGGGTGTGGGTTTCGGAGGTTATGCTGCAGCAAACTAGGGTTCAGACTGTTATTGCCTATTACAACCGTTGGATGAAAAAATGGCCCACCATTCACCATCTTGCACAAGCTTCTCTCGAGGAAGTAAATGAGATGTGGGCAGGTTTGGGCTACTACCGAAGAGCACGTTTTCTTTTTGAGGGGGCAAAGAAAATAGTTGCAGAAGGAGGCAAAATTCCTAAAATGGCTTCTATGCTACGAAAGATTCCTGGAATTGGAGACTACACATCTGGAGCAATTGCTTCTATTGCATTTAAAGAGGTGGTACCTGTTGTTGATGGAAATGTGGTAAGGGTGATTGCTAGACTAAGGGCTGTTTCTGCGAATCCAAAAGACTCAGCAACCGTTAAGAGATTTTGGAAATTAGCAGCTCAGTTGGTTGATCCCATTCGTCCTGGGGACTTCAATCAGGCTCTCATGGAACTTGGGGCAACTGTTTGCACCCCTTTGAACCCAAGCTGTTCCTCATGTCCAGCATCAGAATTTTGTCATGCACTATCAAATGCTAAACATGATAGTACAGTAGCTGTTACAGATTATCCTGTTAAGGGTGTGAAGGTTAAACAAAGACGTGATTTTTCTGCTGTATGTGTTGTTGAGTTATTTGGAGCTGAAACATTGTTAGATAAAAATCAGTCTATTAGCAAGTTTATTCTTGTTAAAAGGCCTGAAGAAGGGTTGCTTGCTGGTCTGTGGGAGTTTCCATCTGTCTCACTGGATGGAGAAACAGTTCCGTCTTCTAGAAGAGAAGCAATGGATCACTTCCTTAAAGCAAATTTCAAAATTGATGTCAGAAAGGCTTGCAATATAGTTTTGAGGGAAGATATTGGGGAATTTGTTCACATTTTCAGTCACATTCGCCTCAAGTTGTATGTTGAATTGCTAGTGTTACAATTTAAAGGAGGAATAGATGATTTGTTCAAAAGCCCAGACGATAAAACAACTTGGAAGTGCGTTTACAGCAATGCACTTCCTAGTATGGGACTGACAACAAGTGTCTCATGCTTGTGCATTGAGCAAGTGGAATGA 1488 0.4241 MPALENKPNLKFDLILEMLLSGLGHNKKKWKMERQQQDVCLGMEGDVNFQEPEGSDMSEKKKNMRRMSNGGASKKPQPLVEVEDIEDGISFSRDETQKLRVALLDWYDLNHRDLPWRTHHRESEEKQEEEEEEEVERRAYGVWVSEVMLQQTRVQTVIAYYNRWMKKWPTIHHLAQASLEEVNEMWAGLGYYRRARFLFEGAKKIVAEGGKIPKMASMLRKIPGIGDYTSGAIASIAFKEVVPVVDGNVVRVIARLRAVSANPKDSATVKRFWKLAAQLVDPIRPGDFNQALMELGATVCTPLNPSCSSCPASEFCHALSNAKHDSTVAVTDYPVKGVKVKQRRDFSAVCVVELFGAETLLDKNQSISKFILVKRPEEGLLAGLWEFPSVSLDGETVPSSRREAMDHFLKANFKIDVRKACNIVLREDIGEFVHIFSHIRLKLYVELLVLQFKGGIDDLFKSPDDKTTWKCVYSNALPSMGLTTSVSCLCIEQVE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01923 495 SMART endo3end 148 298 IPR003265 GO:0006284
Spst4g01923 495 SUPERFAMILY DNA-glycosylase 99 321 IPR011257 GO:0003824|GO:0006281
Spst4g01923 495 FunFam Adenine DNA glycosylase 339 490 - -
Spst4g01923 495 FunFam Adenine DNA glycosylase 113 243 - -
Spst4g01923 495 Gene3D - 98 318 IPR023170 -
Spst4g01923 495 Gene3D Hypothetical protein; domain 2 113 243 - -
Spst4g01923 495 Pfam NUDIX domain 369 448 IPR029119 -
Spst4g01923 495 SUPERFAMILY Nudix 334 450 IPR015797 -
Spst4g01923 495 PANTHER ADENINE DNA GLYCOSYLASE 58 487 IPR044298 GO:0006284|GO:0016798
Spst4g01923 495 CDD ENDO3c 140 296 IPR003265 GO:0006284
Spst4g01923 495 CDD DNA_Glycosylase_C 343 450 IPR029119 -
Spst4g01923 495 MobiDBLite consensus disorder prediction 46 78 - -
Spst4g01923 495 FunFam Adenine DNA glycosylase 237 319 - -
Spst4g01923 495 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 339 493 - -
Spst4g01923 495 Pfam HhH-GPD superfamily base excision DNA repair protein 144 276 IPR003265 GO:0006284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01923 K03575 - gmx:100818278 734.176