Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00164 ATGGAGACGGTAGGGTATGACAGGGCTGACCACTTTTCACCATTGATCGGAGCAGAGTCTCTGGATGGTCCTCTGGTGGCCGTTGAACGACACGTCAAGGCAGAAACGGAGATGGAGCTTTTGTCGCGGGAGGGAGAGTTTCTCTCTCTAGATTTCTGTTTTTCATTATCACCATCGCGAATAAGTTCCAACATGTCAGAGAAGAAGAAGAATATGCGTGGAAGGAGAACCGTTGGGGCGAAAAAAAAGCCTCAACCTTTGGTGGAAGTGGAAGACATAGAGGACGCTACGTTCTTCTCCAAAGACGAGACTCACCAACTGAGACTGTCCCTTTTGAACTGGTACGACCTCAACCGCAGGGACCTTCCTTGGAGATCACATCTACGTGAAGATGAAGAAAAACAAGAAGAAGAAGAAGAAGTGGAAAGAAAAGCTTATGGGGTGTGGGTCTCGGAGGTTATGCTTCAGCAAACAAGGGTTCAGACTGTTATTGCGTATTACAATCGTTGGATGCAAAAATGGCCCACCATTTACCATCTCGCACAAGCTTCTCTCGAGGAAGTAAATGAGATGTGGGCAGGTTTGGGCTACTACCGAAGAGCTCGTTTTCTTCTAGAGGGGGCAAAGAAAGTAGTTGCAGAAGGTGGCAAAATTCCTAAAGTGGCTTCCATGCTACGAAAGATTCCTGGAATTGGAGACTACACTTCTGGAGCAATTGCTTCTATTGCATTTAAAGAGGTGGTACCTGTTGTTGATGGAAATGTGGTAAGGGTGATTGCTAGACTAAGGGCTGTTTCTGCAAATCCAAAAGAATCGGTGACTGTTAAGAGATTTTGGAAATTAGCAGCTCAGTTGGTTGATCCTGTTCGTCCTGGGGACTTCAATCAGGCTCTCATGGAACTTGGGGCGACTGTATGCACCCCTTTGAACCCAAGCTGTTCGTCATGTCCAGCATCAGAATTTTGTCAAGCACTATCAAATGCTAAACATGATAGTGCAGTAGCAGTAACAGATTATCCCGTTAAGGGTGTGAAGGTCAAACAAAGATGTGATTTCTCTGCTGTATGTGTTGTTGAGTTACTTGGAGCTGAAGCATTGTTAGACAAAAACCAGTCTATTAGCAAGTTTATTCTTGTCAAAAGGCCTGAAGAAGGGTTGCTTGCTGGTCTCTGGGAGTTTCCATCTGTCTTACTGGATGGAGAAACAGTTCCATCGACTAGAAGAGAAACAATGAATCGCTTCTTGAAAGCAAATTTCAAAATTGATGTCAGAAAGACTTGCAATATAGTTTTGAGGGAAGATATTGGGGAATTTGTTCACATTTTCAGCCACATTCGCCTCAAGTTGTATGTTGAATTGCTAGTGTTACAATCTAAAGAAGGAGGAGAAGATGATTTGTTCAAAAGCCCAGATAATAAACCAACTTGGAAGTGCGTTTACAGCAATGCACTTTCTGGTATGGGGCTGACAACAAGTGTAAGAAAGGTGTACAACATGGTTCAAAACTTCAAGCAGAAAGCTCTTCCTTCTAAACATGTGCCAACCAAAAAGAGAACTAGAACTGCACAAAGAAGCTAG 1578 0.4366 METVGYDRADHFSPLIGAESLDGPLVAVERHVKAETEMELLSREGEFLSLDFCFSLSPSRISSNMSEKKKNMRGRRTVGAKKKPQPLVEVEDIEDATFFSKDETHQLRLSLLNWYDLNRRDLPWRSHLREDEEKQEEEEEVERKAYGVWVSEVMLQQTRVQTVIAYYNRWMQKWPTIYHLAQASLEEVNEMWAGLGYYRRARFLLEGAKKVVAEGGKIPKVASMLRKIPGIGDYTSGAIASIAFKEVVPVVDGNVVRVIARLRAVSANPKESVTVKRFWKLAAQLVDPVRPGDFNQALMELGATVCTPLNPSCSSCPASEFCQALSNAKHDSAVAVTDYPVKGVKVKQRCDFSAVCVVELLGAEALLDKNQSISKFILVKRPEEGLLAGLWEFPSVLLDGETVPSTRRETMNRFLKANFKIDVRKTCNIVLREDIGEFVHIFSHIRLKLYVELLVLQSKEGGEDDLFKSPDNKPTWKCVYSNALSGMGLTTSVRKVYNMVQNFKQKALPSKHVPTKKRTRTAQRS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00164 525 CDD ENDO3c 146 302 IPR003265 GO:0006284
Vimu9g00164 525 Pfam HhH-GPD superfamily base excision DNA repair protein 150 282 IPR003265 GO:0006284
Vimu9g00164 525 Gene3D - 107 324 IPR023170 -
Vimu9g00164 525 SMART endo3end 154 304 IPR003265 GO:0006284
Vimu9g00164 525 CDD DNA_Glycosylase_C 375 500 IPR029119 -
Vimu9g00164 525 FunFam Adenine DNA glycosylase 243 325 - -
Vimu9g00164 525 FunFam Adenine DNA glycosylase 345 506 - -
Vimu9g00164 525 SMART ccc3 305 325 IPR003651 GO:0051539
Vimu9g00164 525 Pfam NUDIX domain 375 496 IPR029119 -
Vimu9g00164 525 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 345 507 - -
Vimu9g00164 525 SUPERFAMILY DNA-glycosylase 108 327 IPR011257 GO:0003824|GO:0006281
Vimu9g00164 525 PANTHER ADENINE DNA GLYCOSYLASE 68 512 IPR044298 GO:0006284|GO:0016798
Vimu9g00164 525 SUPERFAMILY Nudix 340 500 IPR015797 -
Vimu9g00164 525 Gene3D Hypothetical protein; domain 2 121 249 - -
Vimu9g00164 525 MobiDBLite consensus disorder prediction 64 83 - -
Vimu9g00164 525 FunFam Adenine DNA glycosylase 121 249 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00164 K03575 - gmx:100818278 785.023