Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1648 . . . . . . . . . . . Apr1g0366 . . . . . . . . . . Gma04g01971 . . . . . . . . . . . . . . . . . . . . . . . . . Pste2g00170 . . . Spst9g01805 Ssu1g2464 . . . . . . . . Vivi3g02277 .
Pvu9g1649 . . . . . . Ahy8g2567 . . Amo08g2321 . . . . . . . . . . . . . . . . Lal17g0801 . . . . . . . . . . . . Mal2g1409 . . . . . . . Psa5g1335 . . . . . . . . . Tsu07g01219 . . . . . .
Pvu9g1650 . . Adu08g02672 . Aev08g2486 Ahy18g2867 Ahy8g2572 Aip08g03262 . Amo08g2326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac9g02660 Phco7g01911 . Psa5g1334 . . . . . . . . . Tsu07g01212 . . . . . .
Pvu9g1651 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01909 . . . . . . . . . . . . . . . . . .
Pvu9g1652 . . Adu08g02674 . . Ahy18g2871 Ahy8g2573 Aip08g03265 . Amo08g2327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01908 . . . . . . . . . . . . . . . . . .
Pvu9g1653 . . . . . . Ahy8g2574 . . Amo08g2328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1654 . . . . . . Ahy8g2575 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac9g02664 Phco7g01905 . Psa5g1319 . . . . . . . . . . . . . . . .
Pvu9g1655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1656 . . . . . . Ahy8g2577 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac9g02666 Phco7g01903 . Psa5g1318 . . . . . . . . . . . . . . . .
Pvu9g1657 . . . Aed10g0751 Aev08g2471 Ahy18g2888 . Aip08g03283 . Amo08g2355 . . . Bach2g02323 . Bva06g01583 Car05g02589 Cca03g00267 . Dod09g0074 . . Gma04g01958 Gma06g01451 . Gso6g1381 Lal17g0809 . . Lan15g0475 . . Lapu9g00907 Lasa5g03492 . . . . Lja1g4380 Mal2g1385 Mepo3g06937 Mesa9g04470 . Mtr3g3459 . Phco7g01902 . . Pste2g00209 Pumo10g01810 Rops10g00879 Seca4g01811 Spst9g01788 Ssu1g2449 . Tpr3g3263 Trre5g04760 Tsu07g01196 . Vifa2g03354 Vimu10g01657 Viun9g01607 Vivi3g02264 .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu9g1648 Chr9 23131828 23139557 +
Apr Apr1g0366 Chr1 4535060 4541893 +
Gma Gma04g01971 Chr04 50134659 50142557 +
Pste Pste2g00170 Chr2 833573 840875 -
Spst Spst9g01805 Chr9 21533248 21536570 +
Ssu Ssu1g2464 Chr1 68354051 68357493 +
Vivi Vivi3g02277 Chr3 37512896 37517082 +
Pvu Pvu9g1649 Chr9 23148091 23150745 -
Ahy Ahy8g2567 Chr8 48586843 48591810 -
Amo Amo08g2321 Chr08 36579720 36582544 -
Lal Lal17g0801 Chr17 5873996 5878033 +
Mal Mal2g1409 Chr2 16895701 16898322 -
Psa Psa5g1335 Chr5 104491119 104494878 +
Tsu Tsu07g01219 Chr07 10507344 10510051 -
Pvu Pvu9g1650 Chr9 23157448 23166396 +
Adu Adu08g02672 Chr08 42918341 42927063 +
Aev Aev08g2486 Chr08 23682422 23687831 +
Ahy Ahy18g2867 Chr18 133424852 133429979 +
Ahy Ahy8g2572 Chr8 48618362 48623448 -
Aip Aip08g03262 Chr08 123675801 123680991 +
Amo Amo08g2326 Chr08 36609690 36614843 -
Phac Phac9g02660 Chr9 25040601 25050647 +
Phco Phco7g01911 Chr7 23163641 23174524 -
Psa Psa5g1334 Chr5 104465850 104474996 -
Tsu Tsu07g01212 Chr07 10435764 10438262 +
Pvu Pvu9g1651 Chr9 23170976 23175887 +
Phco Phco7g01909 Chr7 23147905 23148264 -
Pvu Pvu9g1652 Chr9 23181270 23182914 +
Adu Adu08g02674 Chr08 42941126 42942556 +
Ahy Ahy18g2871 Chr18 133450745 133456360 +
Ahy Ahy8g2573 Chr8 48624767 48626714 +
Aip Aip08g03265 Chr08 123699447 123701436 +
Amo Amo08g2327 Chr08 36616163 36618088 +
Phco Phco7g01908 Chr7 23104542 23105636 -
Pvu Pvu9g1653 Chr9 23183138 23189462 -
Ahy Ahy8g2574 Chr8 48627238 48630330 -
Amo Amo08g2328 Chr08 36618617 36621669 -
Pvu Pvu9g1654 Chr9 23203134 23222717 +
Ahy Ahy8g2575 Chr8 48664502 48678098 +
Phac Phac9g02664 Chr9 25103560 25121861 +
Phco Phco7g01905 Chr7 23060318 23061613 -
Psa Psa5g1319 Chr5 102494112 102503465 -
Pvu Pvu9g1655 Chr9 23227040 23227837 +
Pvu Pvu9g1656 Chr9 23228847 23232843 -
Ahy Ahy8g2577 Chr8 48687703 48691663 -
Phac Phac9g02666 Chr9 25133728 25137582 -
Phco Phco7g01903 Chr7 23003076 23005171 +
Psa Psa5g1318 Chr5 102446566 102450708 +
Pvu Pvu9g1657 Chr9 23242225 23246280 +
Aed Aed10g0751 Chr10 6170933 6174784 +
Aev Aev08g2471 Chr08 23595024 23597999 -
Ahy Ahy18g2888 Chr18 133604958 133609603 +
Aip Aip08g03283 Chr08 123858749 123863409 +
Amo Amo08g2355 Chr08 36917857 36922455 +
Bach Bach2g02323 Chr2 29731149 29734171 -
Bva Bva06g01583 Chr06 11302502 11305814 -
Car Car05g02589 Chr05 70919088 70923247 +
Cca Cca03g00267 Chr03 3927707 3931533 +
Dod Dod09g0074 Chr09 1027692 1033401 +
Gma Gma04g01958 Chr04 50023583 50027448 -
Gma Gma06g01451 Chr06 13815780 13826460 +
Gso Gso6g1381 Chr6 13549646 13553732 +
Lal Lal17g0809 Chr17 5919514 5926361 +
Lan Lan15g0475 Chr15 11089815 11099671 -
Lapu Lapu9g00907 Chr9 13592177 13595764 +
Lasa Lasa5g03492 Chr5 567162101 567165693 +
Lja Lja1g4380 Chr1 56681437 56684754 -
Mal Mal2g1385 Chr2 16647088 16650309 -
Mepo Mepo3g06937 Chr3 82999054 83002986 +
Mesa Mesa9g04470 Chr9 78076035 78079481 +
Mtr Mtr3g3459 Chr3 48423066 48427680 +
Phco Phco7g01902 Chr7 22925071 22928253 -
Pste Pste2g00209 Chr2 1128400 1133001 +
Pumo Pumo10g01810 Chr10 23784721 23788396 +
Rops Rops10g00879 Chr10 19820027 19824047 -
Seca Seca4g01811 Chr4 29971535 29975916 -
Spst Spst9g01788 Chr9 20264581 20267739 -
Ssu Ssu1g2449 Chr1 68140492 68143790 -
Tpr Tpr3g3263 Chr3 35920433 35925178 +
Trre Trre5g04760 Chr5 49467977 49472169 -
Tsu Tsu07g01196 Chr07 10255231 10259210 -
Vifa Vifa2g03354 Chr2 963683720 963689124 +
Vimu Vimu10g01657 Chr10 21900341 21901887 -
Viun Viun9g01607 Chr9 23911225 23915031 -
Vivi Vivi3g02264 Chr3 37285423 37291171 -